EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes. - Ashwini Bhasi; Ram Vinay Pandey; Suriya Prabha Utharasamy; Periannan Senapathy (Bioinform., 2007)

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). - Robert Kofler; Ram Vinay Pandey; Christian Schlötterer (Bioinform., 2011)

ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research. - Ram Vinay Pandey; Stephan Pabinger; Albert Kriegner; Andreas Weinhäusel (BMC Bioinform., 2016)