Kernel mechanism of the cyanobacterial circadian clock is a relaxation oscillator. - Lan Ma; Rama Ranganathan (CDC/ECC, 2011)

Systems-level characterization of the kernel mechanism of the cyanobacterial circadian oscillator. - Lan Ma; Rama Ranganathan (Biosyst., 2014)

The Context-Dependence of Mutations: A Linkage of Formalisms. - Frank J. Poelwijk; Vinod Krishna; Rama Ranganathan (PLoS Comput. Biol., 2016)

Evolution-Based Functional Decomposition of Proteins. - Olivier Rivoire; Kimberly A. Reynolds; Rama Ranganathan (PLoS Comput. Biol., 2016)