Deep Unfolding for Non-Negative Matrix Factorization with Application to Mutational Signature Analysis. - Rami Nasser; Yonina C. Eldar; Roded Sharan (J. Comput. Biol., 2022)

Multi-modal contrastive learning of subcellular organization using DICE. - Rami Nasser; Leah V. Schaffer; Trey Ideker; Roded Sharan (Bioinform., 2024)

An Adversarial Scheme for Integrating Multi-modal Data on Protein Function. - Rami Nasser; Leah V. Schaffer; Trey Ideker; Roded Sharan (RECOMB, 2025)