Gene clustering by Latent Semantic Indexing of MEDLINE abstracts. - Ramin Homayouni; Kevin Heinrich; Lai Wei; Michael W. Berry (Bioinform., 2005)

Using a literature-based NMF model for discovering gene functional relationships. - Elina Tjioe; Michael W. Berry; Ramin Homayouni; Kevin Heinrich (BMC Bioinform., 2008)

Gene Tree Labeling Using Nonnegative Matrix Factorization on Biomedical Literature. - Kevin Heinrich; Michael W. Berry; Ramin Homayouni (Comput. Intell. Neurosci., 2008)

LSI based framework to predict gene regulatory information. - Sujoy Roy; Lijing Xu; Ramin Homayouni (BMC Bioinform., 2009)

Slim-Prim: an integrated data system for clinical and translational research. - Teeradache Viangteeravat; Ian M. Brooks; Somchan Vuthipadadon; Eunice Y. Huang; Ebony Smith; Ramin Homayouni; Chanchai McDonald (BMC Bioinform., 2009)

A systematic study on latent semantic analysis model parameters for mining biomedical literature. - Mohammed Yeasin; Haritha Malempati; Ramin Homayouni; Mohammad S. Sorower (BMC Bioinform., 2009)

Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization). - Elina Tjioe; Michael W. Berry; Ramin Homayouni (BMC Bioinform., 2010)

Slim-Prim: an integrated data system for clinical and translational research. - Teeradache Viangteeravat; Ian M. Brooks; Somchan Vuthipadadon; Emin Kuscu; Naga Nagisetty; Ebony Smith; Ramin Homayouni; Chanchai McDonald (BMC Bioinform., 2010)

Literature-based Evaluation of Microarray Normalization Procedures. - Nicholas A. Furlotte; Lijing Xu; Robert W. Williams; Ramin Homayouni (BIBM, 2011)

System dynamics modeling of childhood obesity. - Behrouz Madahian; Lisa Klesges; Ramin Homayouni (BIBM Workshops, 2011)

Literature based Bayesian analysis of gene expression data. - Lijing Xu; Ramin Homayouni; E. Olusegun George (BIBM Workshops, 2011)

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. - Eric C. Rouchka; Robert M. Flight; Ramin Homayouni (BMC Bioinform., 2011)

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets. - Sujoy Roy; Kevin Heinrich; Vinhthuy Phan; Michael W. Berry; Ramin Homayouni (BMC Bioinform., 2011)

ColonyTrak: a web tool and database system for managing experimental animal models. - Laasya Vadlamudi; Lynn A. Jones; Ramin Homayouni (BMC Bioinform., 2011)

System dynamics modeling of childhood obesity. - Behrouz Madahian; Robert C. Klesges; Lisa Klesges; Ramin Homayouni (BMC Bioinform., 2012)

Development of sparse Bayesian multinomial generalized linear model for multi-class prediction. - Behrouz Madahian; Lih-Yuan Deng; Ramin Homayouni (BMC Bioinform., 2014)

Development of a literature informed Bayesian machine learning method for feature extraction and classification. - Behrouz Madahian; Lih-Yuan Deng; Ramin Homayouni (BMC Bioinform., 2015)

A Bayesian approach for inducing sparsity in generalized linear models with multi-category response. - Behrouz Madahian; Sujoy Roy; Dale Bowman; Lih-Yuan Deng; Ramin Homayouni (BMC Bioinform., 2015)

Prioritization, clustering and functional annotation of MicroRNAs using latent semantic indexing of MEDLINE abstracts. - Sujoy Roy; Brandon C. Curry; Behrouz Madahian; Ramin Homayouni (BMC Bioinform., 2016)

Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Inimary T. Toby; Bindu Nanduri; Ramin Homayouni; Prashanti Manda; Shraddha Thakkar (BMC Bioinform., 2017)

An efficient Bayesian approach for Gaussian Bayesian network structure learning. - Shengtong Han; Hongmei Zhang 006; Ramin Homayouni; Wilfried Karmaus (Commun. Stat. Simul. Comput., 2017)

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. - Eric C. Rouchka; Julia H. Chariker; David Tieri; Juw Won Park; Shreedharkumar D. Rajurkar; Vikas Singh; Nishchal K. Verma; Yan Cui 001; Mark L. Farman; Bradford Condon; Neil Moore; Jerzy W. Jaromczyk; et al. (BMC Bioinform., 2017)

Evaluation of Sirtuin-3 probe quality and co-expressed genes using literature cohesion. - Sujoy Roy; Kazi I. Zaman; Robert W. Williams; Ramin Homayouni (BMC Bioinform., 2019)

Proceedings of the 2018 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. - Jonathan D. Wren; Robert J. Doerksen; Inimary T. Toby; Bindu Nanduri; Ramin Homayouni; Prashanti Manda; Shraddha Thakkar (BMC Bioinform., 2019)

Unstructured Text in EMR Improves Prediction of Death after Surgery in Children. - Oguz Akbilgic; Ramin Homayouni; Kevin Heinrich; Max Raymond Langham; Robert Lowell Davis (Informatics, 2019)

Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Yongsheng Bai; Zhaohui S. Qin; Da Yan 001; Ramin Homayouni (BMC Bioinform., 2020)

Editorial: Unleashing Innovation on Precision Public Health-Highlights From the MCBIOS and MAQC 2021 Joint Conference. - Ramin Homayouni; Huixiao Hong; Prashanti Manda; Bindu Nanduri; Inimary T. Toby (Frontiers Artif. Intell., 2022)

Editorial: AI and data science in drug development and public health: Highlights from the MCBIOS 2022 conference. - Ramin Homayouni; Prashanti Manda; Aik Choon Tan; Zhaohui S. Qin (Frontiers Big Data, 2023)

Large-scale identification of social and behavioral determinants of health from clinical notes: comparison of Latent Semantic Indexing and Generative Pretrained Transformer (GPT) models. - Sujoy Roy; Shane Morrell; Lili Zhao; Ramin Homayouni (BMC Medical Informatics Decis. Mak., 2024)