TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples. - Sanghamitra Bandyopadhyay; Ramkrishna Mitra (Bioinform., 2009)

SFSSClass: an integrated approach for miRNA based tumor classification. - Ramkrishna Mitra; Sanghamitra Bandyopadhyay; Ujjwal Maulik; Michael Q. Zhang (BMC Bioinform., 2010)

Identifying transcription factor and microRNA mediated synergetic regulatory networks in lung cancer. - Ramkrishna Mitra; Jingchun Sun; Min Zhao 006; Zhongming Zhao (BMC Bioinform., 2013)

The oncogenic and prognostic potential of eight microRNAs identified by a synergetic regulatory network approach in lung cancer. - Ramkrishna Mitra; Zhongming Zhao (Int. J. Comput. Biol. Drug Des., 2014)

Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types. - Wei Jiang 023; Ramkrishna Mitra; Chen-Ching Lin; Quan Wang 004; Feixiong Cheng; Zhongming Zhao (Briefings Bioinform., 2016)

TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes. - Min Zhao 006; Pora Kim; Ramkrishna Mitra; Junfei Zhao; Zhongming Zhao (Nucleic Acids Res., 2016)