Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. - Ramona L. Walls; Hong Cui; James A. Macklin; Chris Mungall; Laurel Cooper; Dennis W. Stevenson; Pankaj Jaiswal (ICBO, 2012)

A plant disease extension of the Infectious Disease Ontology. - Ramona L. Walls; Barry Smith 001; Justin Elser; Albert Goldfain; Dennis W. Stevenson; Pankaj Jaiswal (ICBO, 2012)

Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach. - Philippe Rocca-Serra; Ramona L. Walls; Jacob Parnell; Rachel Gallery; Jie Zheng 001; Susanna-Assunta Sansone; Alejandra N. González-Beltrán (ICBO, 2014)

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. - Wasila M. Dahdul; Hong Cui; Paula M. Mabee; Christopher J. Mungall; David Osumi-Sutherland; Ramona L. Walls; Melissa A. Haendel (J. Biomed. Semant., 2014)

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach. - Philippe Rocca-Serra; Ramona L. Walls; Jacob Parnell; Rachel Gallery; Jie Zheng 001; Susanna-Assunta Sansone; Alejandra N. González-Beltrán (Database J. Biol. Databases Curation, 2015)

Content-based comparison for collections identification. - Weijia Xu; Ruizhu Huang; Maria Esteva; Jawon Song; Ramona L. Walls (IEEE BigData, 2016)

Identifier Services: Tracking Objects and Metadata Across Time and Distributed Storage Systems. - Maria Esteva; Ramona L. Walls (Dublin Core Conference, 2016)

Environmental Semantics for Sustainable Development in an Interconnected Biosphere. - Pier Luigi Buttigieg; Mark Jensen; Ramona L. Walls; Christopher J. Mungall (ICBO/BioCreative, 2016)

Defining and Sustaining Populations and Communities. - Ramona L. Walls (ICBO/BioCreative, 2016)

MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. - Carrine E. Blank; Hong Cui; Lisa R. Moore; Ramona L. Walls (J. Biomed. Semant., 2016)

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. - Pier Luigi Buttigieg; Evangelos Pafilis; Suzanna E. Lewis; Mark P. Schildhauer; Ramona L. Walls; Christopher J. Mungall (J. Biomed. Semant., 2016)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

Accelerating the Large-Scale Study of Prokaryotic Phenotypes and Niche Space Evolution Through Time Using the MicrO Ontology, MicroPIE, and MicroPIEDigester Software. - Carrine E. Blank; Hong Cui; Jin Mao; Lisa R. Moore; Robert W. Thacker; Ramona L. Walls (Application of Semantic Technology in Biodiversity Science, 2018)

'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. - Ian Braun; James P. Balhoff; Tanya Z. Berardini; Laurel Cooper; Georgios V. Gkoutos; Lisa C. Harper; Eva Huala; Pankaj Jaiswal; Toni Kazic; Hilmar Lapp; James A. Macklin; Chelsea D. Specht; et al. (Application of Semantic Technology in Biodiversity Science, 2018)

Integrating and Managing Biodiversity Data with the Biocollections Ontology. - Ramona L. Walls; Pier Luigi Buttigieg; John Deck; Robert P. Guralnick; John Wieczorek (Application of Semantic Technology in Biodiversity Science, 2018)

Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure. - Maria Esteva; Ramona L. Walls; Andrew B. Magill; Weijia Xu; Ruizhu Huang; James D. Carson; Jawon Song (Data Inf. Manag., 2019)

Transforming the study of organisms: Phenomic data models and knowledge bases. - Anne E. Thessen; Ramona L. Walls; Lars Vogt; Jessica Singer; Robert Warren; Pier Luigi Buttigieg; James P. Balhoff; Christopher J. Mungall; Deborah L. McGuinness; Brian J. Stucky; Matthew J. Yoder; Melissa A. Haendel (PLoS Comput. Biol., 2020)

A Responsive Data Curation and Integration Pipeline for Rare Disease Data. - Ramona L. Walls; Jeffery S. Barrett; Alexandre Betourne; Emily Hartley; Jane Larkindale; Daniel Olson; William T. Roddy; Amanda Borens (AMIA, 2021)

Internet of Samples. - Stephen M. Richard; David Vieglais; Hong Cui; Neil Davies 002; John Deck; Quan Gan; Eric C. Kansa; Sarah Whitcher Kansa; John A. Kunze; Danny Mandel; Christopher Meyer; Thomas Orrell; et al. (ASIST, 2021)

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. - Rebecca C. Jackson; Nicolas Matentzoglu; James A. Overton; Randi Vita; James P. Balhoff; Pier Luigi Buttigieg; Seth Carbon; Mélanie Courtot; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Nomi L. Harris; et al. (Database J. Biol. Databases Curation, 2021)

Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences. - Joan E. Damerow; Charuleka Varadharajan; Kristin Boye; Eoin L. Brodie; Madison Burrus; K. Dana Chadwick; Robert Crystal-Ornelas; Hesham Elbashandy; Ricardo J. Eloy Alves; Kim S. Ely; Amy E. Goldman; Ted Habermann; et al. (Data Sci. J., 2021)

Ten simple rules to cultivate transdisciplinary collaboration in data science. - Faryad Sahneh; Meghan A. Balk; Marina Kisley; Chi-Kwan Chan; Mercury Fox; Brian Nord; Eric Lyons 002; Tyson Lee Swetnam; Daniela Huppenkothen; Will Sutherland; Ramona L. Walls; Daven P. Quinn; et al. (PLoS Comput. Biol., 2021)

Leveraging Biolink for Interoperability between Semantic Models. - Ian R. Braun; Pablo Alarcón Moreno; Emily Hartley; Daniel Olson; Nirupama Benis; Ronald Cornet; Mark D. Wilkinson; Ramona L. Walls (AMIA, 2022)

Building an Application Ontology and Knowledge Graph for Rare Disease Patient-Level Data. - Emily Hartley; Daniel Olson; Ian Braun; Nicolas Matentzoglu; James A. Overton; Ramona L. Walls (ICBO, 2022)

Translating Medical Vocabularies via the Unified Medical Language Systems. - William T. Roddy; Daniel Olson; Diane Corey; Ian Braun; Terrence R. McHugh; Emily Hartley; Smith Heavner; Ramona L. Walls (ICBO, 2022)

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. - Nicolas Matentzoglu; Damien Goutte-Gattat; Shawn Zheng Kai Tan; James P. Balhoff; Seth Carbon; Anita R. Caron; William D. Duncan; Joe E. Flack; Melissa A. Haendel; Nomi L. Harris; William R. Hogan; Charles Tapley Hoyt; et al. (Database J. Biol. Databases Curation, 2022)

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. - Nicolas Matentzoglu; Damien Goutte-Gattat; Shawn Zheng Kai Tan; James P. Balhoff; Seth Carbon; Anita R. Caron; William D. Duncan; Joe E. Flack; Melissa A. Haendel; Nomi L. Harris; William R. Hogan; Charles Tapley Hoyt; et al. (CoRR, 2022)