EXPANDER - an integrative program suite for microarray data analysis. - Ron Shamir; Adi Maron-Katz; Amos Tanay; Chaim Linhart; Israel Steinfeld; Roded Sharan; Yosef Shiloh; Ran Elkon (BMC Bioinform., 2005)

SPIKE - a database, visualization and analysis tool of cellular signaling pathways. - Ran Elkon; Rita Vesterman; Nira Amit; Igor Ulitsky; Idan Zohar; Mali Weisz; Gilad Mass; Nir Orlev; Giora Sternberg; Ran Blekhman; Jackie Assa; Yosef Shiloh; et al. (BMC Bioinform., 2008)

Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs. - Ran Elkon; Reuven Agami (PLoS Comput. Biol., 2008)

SPIKE: a database of highly curated human signaling pathways. - Arnon Paz; Zippora Brownstein; Yaara Ber; Shani Bialik; Eyal David; Dorit Sagir; Igor Ulitsky; Ran Elkon; Adi Kimchi; Karen B. Avraham; Yosef Shiloh; Ron Shamir (Nucleic Acids Res., 2011)

Long reads capture simultaneous enhancer-promoter methylation status for cell-type deconvolution. - Sapir Margalit; Yotam Abramson; Hila Sharim; Zohar Manber; Surajit Bhattacharya; Yi-Wen Chen; Eric Vilain; Hayk Barseghyan; Ran Elkon; Roded Sharan; Yuval Ebenstein (Bioinform., 2021)

The DOMINO web-server for active module identification analysis. - Hagai Levi; Nima Rahmanian; Ran Elkon; Ron Shamir (Bioinform., 2022)

Incorporating regulatory interactions into gene-set analyses for GWAS data: A controlled analysis with the MAGMA tool. - David Groenewoud; Avinoam Shye; Ran Elkon (PLoS Comput. Biol., 2022)