A Survey of Visualization Tools for High Performance Computing. - Randy W. Heiland; M. Pauline Baker (PP, 1999)

VisBench: A Framework for Remote Data Visualization and Analysis. - Randy W. Heiland; M. Pauline Baker; Danesh K. Tafti (International Conference on Computational Science (2), 2001)

MutDB services: interactive structural analysis of mutation data. - Jessica Dantzer; Charles W. Moad; Randy W. Heiland; Sean D. Mooney (Nucleic Acids Res., 2005)

NLOPredict: Visualization and data analysis software for nonlinear optics. - Andrew J. Moad; Charles W. Moad; John M. Perry; Ronald D. Wampler; G. Scott Goeken; Nathan J. Begue; Tian Shen; Randy W. Heiland; Garth J. Simpson (J. Comput. Chem., 2007)

Web Service Infrastructure for Chemoinformatics. - Xiao Dong; Kevin E. Gilbert; Rajarshi Guha; Randy W. Heiland; Jungkee Kim; Marlon E. Pierce; Geoffrey Charles Fox; David J. Wild 001 (J. Chem. Inf. Model., 2007)

MutDB: update on development of tools for the biochemical analysis of genetic variation. - Arti Singh; Adebayo Olowoyeye; Peter H. Baenziger; Jessica Dantzer; Maricel G. Kann; Predrag Radivojac; Randy W. Heiland; Sean D. Mooney (Nucleic Acids Res., 2008)

Workflows for parameter studies of multi-cell modeling. - Randy W. Heiland; Maciej Swat; Benjamin Zaitlen; James A. Glazier; Andrew Lumsdaine (SpringSim, 2010)

Visualizing cells and their connectivity graphs for CompuCell3D. - Randy W. Heiland; Abbas Shirinifard; Maciej Swat; Gilberto L. Thomas; James P. Sluka; Andrew Lumsdaine; Benjamin Zaitlen; James A. Glazier (BioVis, 2012)

Toward a Research Software Security Maturity Model. - Randy W. Heiland; Betsy Thomas; Von Welch; Craig Jackson (CoRR, 2013)

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. - James P. Sluka; Abbas Shirinifard; Maciej Swat; Alin Cosmanescu; Randy W. Heiland; James A. Glazier (Bioinform., 2014)

Authentication and Authorization Considerations for a Multi-tenant Service. - Randy W. Heiland; Scott Koranda; Suresh Marru; Marlon E. Pierce; Von Welch (SCREAM@HPDC, 2015)

Science Gateways Incubator: Software Sustainability Meets Community Needs. - Sandra Gesing; Michael G. Zentner; Juliana Casavan; Betsy Hillery; Mihaela Vorvoreanu; Randy W. Heiland; Suresh Marru; Marlon E. Pierce; Nayiri Mullinix; Nancy Maron (eScience, 2017)

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. - Jonathan Ozik; Nicholson T. Collier; Justin M. Wozniak; Charles M. Macal; Chase Cockrell; Samuel H. Friedman; Ahmadreza Ghaffarizadeh; Randy W. Heiland; Gary An; Paul Macklin (BMC Bioinform., 2018)

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. - Ahmadreza Ghaffarizadeh; Randy W. Heiland; Samuel H. Friedman; Shannon M. Mumenthaler; Paul Macklin (PLoS Comput. Biol., 2018)

Students' Use of Metacognitive Skills in Undergraduate Research Experiences in Computational Modeling. - Aasakiran Madamanchi; Randy W. Heiland; Paul Macklin; Alejandra J. Magana (FIE, 2019)

Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences. - Mats Rynge; Karan Vahi; Ewa Deelman; Anirban Mandal; Ilya Baldin; Omkar Bhide; Randy W. Heiland; Von Welch; Raquel Hill; William L. Poehlman; F. Alex Feltus (PEARC, 2019)

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. - Gaëlle Letort; Arnau Montagud; Gautier Stoll; Randy W. Heiland; Emmanuel Barillot; Paul Macklin; Andrei Yu. Zinovyev; Laurence Calzone (Bioinform., 2019)

xml2jupyter: Mapping parameters between XML and Jupyter widgets. - Randy W. Heiland; Daniel Mishler; Tyler Zhang; Eric Bower; Paul Macklin (J. Open Source Softw., 2019)

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. - Michael P. Snyder; Shin Lin; Amanda Posgai; Mark Atkinson; Aviv Regev; Jennifer Rood; Orit Rozenblatt-Rosen; Leslie Gaffney; Anna Hupalowska; Rahul Satija; Nils Gehlenborg; Jay Shendure; et al. (Nat., 2019)

Building multiscale models with PhysiBoSS, an agent-based modeling tool. - Marco Ruscone; Andrea Checcoli; Randy W. Heiland; Emmanuel Barillot; Paul Macklin; Laurence Calzone; Vincent Noël (Briefings Bioinform., 2024)