The role of composition and aggregation in modeling macromolecular regulatory networks. - Clifford A. Shaffer; Ranjit Randhawa; John J. Tyson (WSC, 2006)

Fusing and composing macromolecular regulatory network models. - Ranjit Randhawa; Clifford A. Shaffer; John J. Tyson (SpringSim (2), 2007)

Converting macromolecular regulatory models from deterministic to stochastic formulation. - Pengyuan Wang 005; Ranjit Randhawa; Clifford A. Shaffer; Yang Cao 001; William T. Baumann (SpringSim, 2008)

Model aggregation: a building-block approach to creating large macromolecular regulatory networks. - Ranjit Randhawa; Clifford A. Shaffer; John J. Tyson (Bioinform., 2009)

Model Composition for Macromolecular Regulatory Networks. - Ranjit Randhawa; Clifford A. Shaffer; John J. Tyson (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). - Leonid Chindelevitch; Daniel Ziemek; Ahmed Enayetallah; Ranjit Randhawa; Ben Sidders; Christoph Brockel; Enoch S. Huang (RECOMB, 2011)

Causal reasoning on biological networks: interpreting transcriptional changes. - Leonid Chindelevitch; Daniel Ziemek; Ahmed Enayetallah; Ranjit Randhawa; Ben Sidders; Christoph Brockel; Enoch S. Huang (Bioinform., 2012)