Superimposé: a 3D structural superposition server. - Raphael A. Bauer; Philip E. Bourne; Arno Formella; Cornelius Frömmel; Christoph Gille; Andrean Goede; Aysam Guerler; Andreas Hoppe; Ernst-Walter Knapp; Thorsten Pöschel; Burghardt Wittig; Valentin Ziegler; et al. (Nucleic Acids Res., 2008)

Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors. - Raphael André Bauer; Kristian Rother; Peter Moor; Knut Reinert; Thomas Steinke 001; Janusz M. Bujnicki; Robert Preissner (Algorithms, 2009)

SuperSite: dictionary of metabolite and drug binding sites in proteins. - Raphael André Bauer; Stefan Günther; Dominic Jansen; Carolin Heeger; Paul Florian Thaben; Robert Preissner (Nucleic Acids Res., 2009)

SuperLooper - a prediction server for the modeling of loops in globular and membrane proteins. - Peter Werner Hildebrand; Andrean Goede; Raphael A. Bauer; Björn A. Grüning; Jochen Ismer; Elke Michalsky; Robert Preissner (Nucleic Acids Res., 2009)

Integration of ligand characteristics for the simulation of cellular reactions (Integration von Ligandenspezifika zur Simulation zellulärer Reaktionen) - Raphael André Bauer (2009)