Pathway Activity Profiling (PAPi): from the metabolite profile to the metabolic pathway activity. - Raphael B. M. Aggio; Katya Ruggiero; Silas Granato Villas-Bôas (Bioinform., 2010)

Metab: an R package for high-throughput analysis of metabolomics data generated by GC-MS. - Raphael B. M. Aggio; Silas Granato Villas-Bôas; Katya Ruggiero (Bioinform., 2011)

Identifying and quantifying metabolites by scoring peaks of GC-MS data. - Raphael B. M. Aggio; Arno Mayor; Sophie Reade; Chris Probert; Katya Ruggiero (BMC Bioinform., 2014)