3-D Docking of Protein Molecules. - Daniel Fischer 001; Raquel Norel; Ruth Nussinov; Haim J. Wolfson (CPM, 1993)

[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. - Ruth Nussinov; Raquel Norel; Bilha Sandak; George Verbitsky; Haim J. Wolfson (German Conference on Bioinformatics, 1998)

PUDGE: a flexible, interactive server for protein structure prediction. - Raquel Norel; Donald Petrey; Barry Honig (Nucleic Acids Res., 2010)

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. - Pablo Meyer 001; Julia Hoeng; John Jeremy Rice; Raquel Norel; Jörg Sprengel; Katrin Stolle; Thomas Bonk; Stephanie Corthesy; Ajay K. Royyuru; Manuel C. Peitsch; Gustavo Stolovitzky (Bioinform., 2012)

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. - Adi L. Tarca; Mario Lauria; Michael Unger; Erhan Bilal; Stéphanie Boué; Kushal Kumar Dey; Julia Hoeng; Heinz Koeppl; Florian Martin 002; Pablo Meyer 001; Preetam Nandy; Raquel Norel; et al. (Bioinform., 2013)

DREAM 9: An Acute Myeloid Leukemia Prediction Big Data Challenge. - David Noren; Steven M. Kornblau; Chenyue W. Hu; Byron Long; Alex Bisberg; Raquel Norel; Gustavo Stolovitzky; Amina A. Qutub (ICBO, 2014)

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge. - Michael Biehl; Peter J. Sadowski; Gyan Bhanot; Erhan Bilal; Adel Dayarian; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Michael D. Zeller; Sahand Hormoz (Bioinform., 2015)

A crowd-sourcing approach for the construction of species-specific cell signaling networks. - Erhan Bilal; Theodore Sakellaropoulos; Challenge Participants; Ioannis N. Melas; Dimitris E. Messinis; Vincenzo Belcastro; Kahn Rhrissorrakrai; Pablo Meyer 001; Raquel Norel; Anita Iskandar; Elise Blaese; John Jeremy Rice; et al. (Bioinform., 2015)

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge. - Adel Dayarian; Roberto Romero; Zhiming Wang; Michael Biehl; Erhan Bilal; Sahand Hormoz; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Gyan Bhanot; Feng Luo 001; Adi L. Tarca (Bioinform., 2015)

Inter-species pathway perturbation prediction via data-driven detection of functional homology. - Christoph Hafemeister; Roberto Romero; Erhan Bilal; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Richard Bonneau; Adi L. Tarca (Bioinform., 2015)

Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets. - Sahand Hormoz; Gyan Bhanot; Michael Biehl; Erhan Bilal; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Adel Dayarian (Bioinform., 2015)

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. - Kahn Rhrissorrakrai; Vincenzo Belcastro; Erhan Bilal; Raquel Norel; Carine Poussin; Carole Mathis; Rémi H. J. Dulize; Nikolai V. Ivanov; Leonidas G. Alexopoulos; John Jeremy Rice; Manuel C. Peitsch; Gustavo Stolovitzky; et al. (Bioinform., 2015)

DREAMTools: a Python package for scoring collaborative challenges. - Thomas Cokelaer; Mukesh Bansal; Christopher Bare; Erhan Bilal; Brian M. Bot; Elias Chaibub Neto; Federica Eduati; Mehmet Gönen; Steven M. Hill; Bruce R. Hoff; Jonathan R. Karr; Robert Küffner; et al. (F1000Research, 2015)

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. - Rob Patro; Raquel Norel; Robert J. Prill; Julio Saez-Rodriguez; Peter Lorenz; Felix Steinbeck; Bjoern Ziems; Mitja Lustrek; Nicola Barbarini; Alessandra Tiengo; Riccardo Bellazzi; Hans-Jürgen Thiesen; et al. (BMC Bioinform., 2016)

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis. - David Noren; Byron Long; Raquel Norel; Kahn Rhrissorrakrai; Kenneth R. Hess; Chenyue W. Hu; Alex Bisberg; André Schultz; Erik Engquist; Li Liu 035; Xihui Lin; Gregory M. Chen; et al. (PLoS Comput. Biol., 2016)

Phonological Markers of Oxytocin and MDMA Ingestion. - Carla Agurto; Raquel Norel; Rachel Ostrand; Gillinder Bedi; Harriet de Wit; Matthew J. Baggott; Matthew G. Kirkpatrick; Margaret Wardle; Guillermo A. Cecchi (INTERSPEECH, 2017)

Computing the structure of language for neuropsychiatric evaluation. - Guillermo A. Cecchi; Viatcheslav Gurev; Steve Heisig; Raquel Norel; Irina Rish; Samantha R. Schrecke (IBM J. Res. Dev., 2017)

Detection of Amyotrophic Lateral Sclerosis (ALS) via Acoustic Analysis. - Raquel Norel; Mary Pietrowicz; Carla Agurto; Shay Rishoni; Guillermo A. Cecchi (INTERSPEECH, 2018)

Analyzing progression of motor and speech impairment in ALS. - Carla Agurto; Mary Pietrowicz; Elif K. Eyigöz; Elizabeth Mosmiller; Emily G. Baxi; Jeffrey D. Rothstein; Promit Roy; James D. Berry; Nicholas J. Maragakis; Omar Ahmad; Guillermo A. Cecchi; Raquel Norel (EMBC, 2019)

Speech Markers for Clinical Assessment of Cocaine Users. - Carla Agurto; Raquel Norel; Mary Pietrowicz; Muhammad A. Parvaz; Sivan Kinreich; Keren Bachi; Guillermo A. Cecchi; Rita Z. Goldstein (ICASSP, 2019)

A New Approach for Automating Analysis of Responses on Verbal Fluency Tests from Subjects At-Risk for Schizophrenia. - Mary Pietrowicz; Carla Agurto; Raquel Norel; Elif Eyigöz; Guillermo A. Cecchi; Zarina R. Bilgrami; Cheryl Corcoran (INTERSPEECH, 2019)

Evaluating the utility of a picture description task for monitoring progression of ALS at home. - Carla Agurto; Guillermo A. Cecchi; Mary Pietrowicz; Divya Ramamoorthy; Lorin Wilde; Elizabeth Mosmiller; Emily G. Baxi; Nicholas J. Maragakis; James D. Berry; Ernest Fraenkel; Jeffrey D. Rothstein; Raquel Norel (AMIA, 2020)

Analyzing acoustic and prosodic fluctuations in free speech to predict psychosis onset in high-risk youths. - Carla Agurto; Mary Pietrowicz; Raquel Norel; Elif K. Eyigöz; Emma Stanislawski; Guillermo A. Cecchi; Cheryl Corcoran (EMBC, 2020)

Investigating the Utility of Multimodal Conversational Technology and Audiovisual Analytic Measures for the Assessment and Monitoring of Amyotrophic Lateral Sclerosis at Scale. - Michael Neumann; Oliver Roesler; Jackson Liscombe; Hardik Kothare; David Suendermann-Oeft; David Pautler; Indu Navar; Aria Anvar; Jochen Kumm; Raquel Norel; Ernest Fraenkel; Alexander V. Sherman; et al. (Interspeech, 2021)

Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge. - Solveig K. Sieberts; Jennifer Schaff; Marlena Duda; Bálint Á Pataki; Ming Sun; Phil Snyder; Jean-Francois Daneault; Federico Parisi; Gianluca Costante; Udi Rubin; Peter Banda; Yooree Chae; et al. (npj Digit. Medicine, 2021)

ALS community pressing issues: lessons from a survey. - Aria Anvar; James D. Berry; Ernest Fraenkel; Indu Navar; Guillermo A. Cecchi; Raquel Norel (AMIA, 2022)

Accelerating automation of digital health applications via cloud native approach. - Bo Wen; Yan Koyfman; Hongfei Tian; Boris Lublinsky; Raquel Norel; Carla Agurto; Dean Wampler; Narciso Albarracin (WOC@Middleware, 2022)

PainPoints: A Framework for Language-based Detection of Chronic Pain and Expert-Collaborative Text-Summarization. - Shreyas Fadnavis; Amit Dhurandhar; Raquel Norel; Jenna M. Reinen; Carla Agurto; Erica Secchettin; Vittorio Schweiger; Giovanni Perini; Guillermo A. Cecchi (CoRR, 2022)

Identifying patterns in amyotrophic lateral sclerosis progression from sparse longitudinal data. - Divya Ramamoorthy; Kristen Severson; Soumya Ghosh; Karen Sachs; Emily G. Baxi; Alyssa N. Coyne; Elizabeth Mosmiller; Lindsey Hayes; Aianna Cerezo; Omar Ahmad; Promit Roy; Steven Zeiler; et al. (Nat. Comput. Sci., 2022)

Remote Inference of Cognitive Scores in ALS Patients Using a Picture Description. - Carla Agurto; Guillermo A. Cecchi; Bo Wen; Ernest Fraenkel; James D. Berry; Indu Navar; Raquel Norel (ICDH, 2023)

Leveraging Large Language Models for Patient Engagement: The Power of Conversational AI in Digital Health. - Bo Wen; Raquel Norel; Julia Liu; Thaddeus Stappenbeck; Farhana H. Zulkernine; Huamin Chen (CoRR, 2024)

Clinical assessment and interpretation of dysarthria in ALS using attention based deep learning AI models. - Michele Merler; Carla Agurto; Julian Peller; Esteban Roitberg; Alan Taitz; Marcos A. Trevisan; Indu Navar; James D. Berry; Ernest Fraenkel; Lyle W. Ostrow; Guillermo A. Cecchi; Raquel Norel (npj Digit. Medicine, 2025)

Voice-based AI Agents: Filling the Economic Gaps in Digital Health Delivery. - Bo Wen; Chen Wang; Qiwei Han; Raquel Norel; Julia Liu; Thaddeus Stappenbeck; Jeffrey L. Rogers (CoRR, 2025)