AraC-XylS database: a family of positive transcriptional regulators in bacteria. - Raquel Tobes; Juan L. Ramos (Nucleic Acids Res., 2002)

Repetitive Extragenic Palindromic Sequences in Pseudomonas syringae pv. tomato DC3000 Genome. - Raquel Tobes; Eduardo Pareja (Spanish Bioinformatics Conference, 2004)

BacTregulators: a database of transcriptional regulators in bacteria and archaea. - Manuel Martínez-Bueno; Antonio J. Molina-Henares; Eduardo Pareja; Juan L. Ramos; Raquel Tobes (Bioinform., 2004)

Net7: a new tool for bacterial comparative genomics: massive tracing of vertical and horizontal gene flux between genome elements. - Marina Manrique; Pablo Pareja-Tobes; Eduardo Pareja-Tobes; Marta Brozynska; Eduardo Pareja; Raquel Tobes (IWBBIO, 2013)

BG7: A new approach for bacterial genome annotation designed for Next Generation Sequencing data. - Pablo Pareja-Tobes; Marina Manrique; Eduardo Pareja-Tobes; Eduardo Pareja; Raquel Tobes (IWBBIO, 2013)

Bio4J: An Open source biological data integration platform. - Pablo Pareja-Tobes; Eduardo Pareja-Tobes; Marina Manrique; Eduardo Pareja; Raquel Tobes (IWBBIO, 2013)

Statika: managing cloud resources, bioinformatics tools and data. - Alexey Alekhin; Evdokim Kovach; Pablo Pareja-Tobes; Marina Manrique; Eduardo Pareja; Raquel Tobes; Eduardo Pareja-Tobes (IWBBIO, 2014)

MG7: A fast horizontally scalable tool based on cloud computing and graph databases for microbial community profiling. - Evdokim Kovach; Alexey Alekhin; Marina Manrique; Pablo Pareja-Tobes; Eduardo Pareja; Raquel Tobes; Eduardo Pareja-Tobes (IWBBIO, 2014)

Nispero: a cloud-computing based Scala tool specially suited for bioinformatics data processing. - Evdokim Kovach; Alexey Alekhin; Marina Manrique; Pablo Pareja-Tobes; Eduardo Pareja; Raquel Tobes; Eduardo Pareja-Tobes (IWBBIO, 2014)

Bio4j: bigger, faster, leaner. - Pablo Pareja-Tobes; Alexey Alekhin; Evdokim Kovach; Marina Manrique; Eduardo Pareja; Raquel Tobes; Eduardo Pareja-Tobes (IWBBIO, 2014)