Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction. - Ryan Cobb; Rasha Elhesha; J. Gordon Burleigh; Tamer Kahveci (BCB, 2014)

Counting independent motifs in probabilistic networks. - Aisharjya Sarkar; Yuanfang Ren; Rasha Elhesha; Tamer Kahveci (BCB, 2016)

Identification of large disjoint motifs in biological networks. - Rasha Elhesha; Tamer Kahveci (BMC Bioinform., 2016)

Motif centrality in food web networks. - Rasha Elhesha; Tamer Kahveci; Benjamin Baiser (J. Complex Networks, 2017)

ANCA: Alignment-based Network Construction Algorithm. - Kevin Chow; Ahmet Ay; Rasha Elhesha; Tamer Kahveci (BCB, 2018)

Identification of Co-evolving Temporal Networks. - Rasha Elhesha; Aisharjya Sarkar; Christina Boucher 001; Tamer Kahveci (BCB, 2018)

Co-evolving Patterns in Temporal Networks of Varying Evolution. - Rasha Elhesha; Aisharjya Sarkar; Pietro Cinaglia; Christina Boucher 001; Tamer Kahveci (BCB, 2019)

A New Algorithm for Counting Independent Motifs in Probabilistic Networks. - Aisharjya Sarkar; Yuanfang Ren; Rasha Elhesha; Tamer Kahveci (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

ANCA: Alignment-Based Network Construction Algorithm. - Kevin Chow; Aisharjya Sarkar; Rasha Elhesha; Pietro Cinaglia; Ahmet Ay; Tamer Kahveci (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)