Two-Hit Filter Synthesis for Genomic Database Search. - Jordan A. Bradshaw; Rasha Karakchi; Jason D. Bakos (FCCM, 2016)

High-level synthesis of a genomic database search engine. - Rasha Karakchi; Jordan A. Bradshaw; Jason D. Bakos (ReConFig, 2016)

A Dynamically Reconfigurable Automata Processor Overlay. - Rasha Karakchi; Lothrop O. Richards; Jason D. Bakos (ReConFig, 2017)

An Overlay Architecture for Pattern Matching. - Rasha Karakchi; Charles Daniels; Jason D. Bakos (ASAP, 2019)

NAPOLY: A Non-deterministic Automata Processor OverLaY. - Rasha Karakchi; Jason D. Bakos (ACM Trans. Reconfigurable Technol. Syst., 2023)

Towards a Scalable Spiking Neural Network. - Rasha Karakchi; Jacob Frierson (ACR, 2024)

An Approach to Mitigate CNN Complexity on Domain-Specific Architectures. - Rasha Karakchi; Noah Robertson (ACR, 2024)

Developing a Self-Explanatory Transformer. - Rasha Karakchi; Ryan Karbowniczak (SEC, 2024)

A Scored Non-Deterministic Finite Automata Processor for Sequence Alignment. - Ryan Karbowniczak; Rasha Karakchi (CoRR, 2024)

Optimizing Sequence Alignment with Scored NFAs. - Ryan Karbowniczak; Rasha Karakchi (CoRR, 2025)

AI-Driven Optimization of Hardware Overlay Configurations. - Rasha Karakchi (CoRR, 2025)

Toward a Lightweight, Scalable, and Parallel Secure Encryption Engine. - Rasha Karakchi; Rye Stahle-Smith; Nishant Chinnasami; Tiffany Yu (CoRR, 2025)

ML-Enhanced AES Anomaly Detection for Real-Time Embedded Security. - Nishant Chinnasami; Rye Stahle-Smith; Rasha Karakchi (CoRR, 2025)

ML-Based Automata Simplification for Symbolic Accelerators. - Tiffany Yu; Rye Stahle-Smith; Darssan Eswaramoorthi; Rasha Karakchi (CoRR, 2025)