Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns. - Rashmie Abeysinghe; Michael A. Brooks; Jeffery C. Talbert; Licong Cui (AMIA, 2017)

Query-constraint-based association rule mining from diverse clinical datasets in the national sleep research resource. - Rashmie Abeysinghe; Licong Cui (BIBM, 2017)

Auditing subtype inconsistencies among gene ontology concepts. - Rashmie Abeysinghe; Eugene W. Hinderer; Hunter N. B. Moseley; Licong Cui (BIBM, 2017)

Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels. - Rashmie Abeysinghe; Xufeng Qu; Licong Cui (AMIA, 2018)

A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies. - Rashmie Abeysinghe; Fengbo Zheng; Eugene W. Hinderer; Hunter N. B. Moseley; Licong Cui (BIBM, 2018)

Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource. - Rashmie Abeysinghe; Licong Cui (BMC Medical Informatics Decis. Mak., 2018)

Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus. - Rashmie Abeysinghe; Michael A. Brooks; Licong Cui (AMIA, 2019)

A Hybrid Method to Detect Missing Hierarchical Relations in NCI Thesaurus. - Fengbo Zheng; Rashmie Abeysinghe; Licong Cui (BIBM, 2019)

Pattern-based Extraction of Disease Drug Combination Knowledge from Biomedical Literature. - Jing Liu; Rashmie Abeysinghe; Fengbo Zheng; Licong Cui (ICHI, 2019)

SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology. - Rashmie Abeysinghe; Eugene W. Hinderer; Hunter N. B. Moseley; Licong Cui (Bioinform., 2020)

Detecting missing IS-A relations in the NCI Thesaurus using an enhanced hybrid approach. - Fengbo Zheng; Rashmie Abeysinghe; Nicholas Sioutos; Lori Whiteman; Lyubov Remennik; Licong Cui (BMC Medical Informatics Decis. Mak., 2020)

A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology. - Rashmie Abeysinghe; Fengbo Zheng; Licong Cui (AMIA, 2021)

Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT. - Xubing Hao; Rashmie Abeysinghe; Fengbo Zheng; Licong Cui (BIBM, 2021)

Identification of missing concepts in biomedical terminologies using sequence-based formal concept analysis. - Fengbo Zheng; Rashmie Abeysinghe; Licong Cui (BMC Medical Informatics Decis. Mak., 2021)

Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. - Maryamsadat Mohtashamian; Ran Hu; Rashmie Abeysinghe; Xubing Hao; Hua Xu 001; Licong Cui (AMIA, 2022)

A substring replacement approach for identifying missing IS-A relations in SNOMED CT. - Xubing Hao; Rashmie Abeysinghe; Jay Shi; Licong Cui (BIBM, 2022)

Identifying Missing IS-A Relations in Orphanet Rare Disease Ontology. - Maryamsadat Mohtashamian; Rashmie Abeysinghe; Xubing Hao; Licong Cui (BIBM, 2022)

IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. - Shiqiang Tao; Wei-Chun Chou; Jianfu Li; Jingcheng Du; Pritham Ram; Rashmie Abeysinghe; Hua Xu 001; Xiaoqian Jiang; Peter W. Rose; Lucila Ohno-Machado; Guo-Qiang Zhang 001 (ICHI, 2022)

An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations. - Rashmie Abeysinghe; Yuntao Yang; Mason Bartels; W. Jim Zheng; Licong Cui (Briefings Bioinform., 2022)

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs. - Warren Manuel; Rashmie Abeysinghe; Yongqun He; Cui Tao; Licong Cui (J. Biomed. Semant., 2022)

Towards quality improvement of vaccine concept mappings in the OMOP vocabulary with a semi-automated method. - Rashmie Abeysinghe; Adam Black; Denys Kaduk; Yupeng Li; Christian Reich; Alexander Davydov; Lixia Yao; Licong Cui (J. Biomed. Informatics, 2022)

A deep learning approach to identify missing is-a relations in SNOMED CT. - Rashmie Abeysinghe; Fengbo Zheng; Elmer V. Bernstam; Jay Shi; Olivier Bodenreider; Licong Cui (J. Am. Medical Informatics Assoc., 2023)

Logical definition-based identification of potential missing concepts in SNOMED CT. - Xubing Hao; Rashmie Abeysinghe; Kirk Roberts; Licong Cui (BMC Medical Informatics Decis. Mak., 2023)

Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS. - Xubing Hao; Rashmie Abeysinghe; Jay Shi; Licong Cui (AIME (1), 2024)

Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. - Rashmie Abeysinghe; Fengbo Zheng; Jay Shi; Samden D. Lhatoo; Licong Cui (J. Biomed. Semant., 2024)

Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements. - Xubing Hao; Rashmie Abeysinghe; Fengbo Zheng; Paul E. Schulz; Licong Cui (BMC Medical Informatics Decis. Mak., 2024)

Identifying Developmental Intellectual Disability as a SUDEP Risk Marker from Epilepsy Monitoring Unit Reports Using Large Language Models. - Ran Hu; Rashmie Abeysinghe; Gorbachev Jowah; Shiqiang Tao; Samden D. Lhatoo; Guo-Qiang Zhang 001; Licong Cui (FLAIRS, 2025)

Quantitatively assessing the impact of the quality of SNOMED CT subtype hierarchy on cohort queries. - Xubing Hao; Xiaojin Li; Yan Huang 034; Jay Shi; Rashmie Abeysinghe; Cui Tao; Kirk Roberts; Guo-Qiang Zhang 001; Licong Cui (J. Am. Medical Informatics Assoc., 2025)

Leveraging pretrained language models for seizure frequency extraction from epilepsy evaluation reports. - Rashmie Abeysinghe; Shiqiang Tao; Samden D. Lhatoo; Guoqiang Zhang 001; Licong Cui (npj Digit. Medicine, 2025)