Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks. - Glennie Helles; Rasmus Fonseca (BMC Bioinform., 2009)

Protein Structure Prediction Using Bee Colony Optimization Metaheuristic. - Rasmus Fonseca; Martin Paluszewski; Pawel Winter (J. Math. Model. Algorithms, 2010)

Protein Packing Quality Using Delaunay Complexes. - Rasmus Fonseca; Pawel Winter; Kevin Karplus (ISVD, 2011)

Ranking Beta Sheet Topologies with Applications to Protein Structure Prediction. - Rasmus Fonseca; Glennie Helles; Pawel Winter (J. Math. Model. Algorithms, 2011)

Bounding Volumes for Proteins: A Comparative Study. - Rasmus Fonseca; Pawel Winter (J. Comput. Biol., 2012)

Adjustable Chain Trees for Proteins. - Pawel Winter; Rasmus Fonseca (J. Comput. Biol., 2012)

Alpha Complexes in Protein Structure Prediction. - Pawel Winter; Rasmus Fonseca (BIOINFORMATICS, 2015)

KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids. - Rasmus Fonseca; Henry van den Bedem; Julie Bernauer (RECOMB, 2015)

Probing RNA Native Conformational Ensembles with Structural Constraints. - Rasmus Fonseca; Henry van den Bedem; Julie Bernauer (J. Comput. Biol., 2016)

Fast, clash-free RNA conformational morphing using molecular junctions. - Amélie Héliou; Dominik Budday; Rasmus Fonseca; Henry van den Bedem (Bioinform., 2017)

Collision-free poisson motion planning in ultra high-dimensional molecular conformation spaces. - Rasmus Fonseca; Dominik Budday; Henry van den Bedem (J. Comput. Chem., 2018)