HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time. - Raunak Shrestha; Ermin Hodzic; Jake Yeung; Kendric Wang; Thomas Sauerwald; Phuong Dao; Shawn Anderson; Himisha Beltran; Mark A. Rubin; Colin C. Collins; Gholamreza Haffari; Süleyman Cenk Sahinalp (RECOMB, 2014)

Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data. - Makoto Yamada; Jiliang Tang; Jose Lugo-Martinez; Ermin Hodzic; Raunak Shrestha; Avishek Saha; Hua Ouyang; Dawei Yin; Hiroshi Mamitsuka; Süleyman Cenk Sahinalp; Predrag Radivojac; Filippo Menczer; et al. (IEEE Trans. Knowl. Data Eng., 2018)

Identification of conserved evolutionary trajectories in tumors. - Ermin Hodzic; Raunak Shrestha; Salem Malikic; Colin C. Collins; Kevin Litchfield; Samra Turajlic; Süleyman Cenk Sahinalp (Bioinform., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)