Reliable File Transfer in Grid Environments. - Ravi K. Madduri; Cynthia S. Hood; William E. Allcock (LCN, 2002)

An Overview of Grid File Transfer Patterns and Their Implementation in the Java CoG Kit. - Gregor von Laszewski; Jarek Gawor; Pawel Plaszczak; Mihael Hategan; Kaizar Amin; Ravi K. Madduri; Scott Gose; S. Shankar (Neural Parallel Sci. Comput., 2004)

Streamlining Grid Operations: Definition and Deployment of a Portal-based User Registration Service. - Ian T. Foster; Veronika Nefedova; Mehran Ahsant; Rachana Ananthakrishnan; Lee Liming; Ravi K. Madduri; Olle Mulmo; Laura Pearlman; Frank Siebenlist (J. Grid Comput., 2006)

caGrid 1.0: A Grid Enterprise Architecture for Cancer Research. - Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi K. Madduri; Tahsin M. Kurç; Frank Siebenlist; Peter A. Covitz; Krishnakant Shanbhag; Ian T. Foster; Joel H. Saltz (AMIA, 2007)

Build Grid Enabled Scientific Workflows Using gRAVI and Taverna. - Kyle Chard; Cem Onyuksel; Wei Tan 001; Dinanath Sulakhe; Ravi K. Madduri; Ian T. Foster (eScience, 2008)

A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. - Joel H. Saltz; Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Philip R. O. Payne; Renato Ferreira 001; Beth Plale; Carole A. Goble; David Ervin; Ashish Sharma 001; Tony Pan; et al. (HealthGrid, 2008)

Building Scientific Workflow with Taverna and BPEL: A Comparative Study in caGrid. - Wei Tan 001; Paolo Missier; Ravi K. Madduri; Ian T. Foster (ICSOC Workshops, 2008)

Orchestrating caGrid Services in Taverna. - Wei Tan 001; Ravi K. Madduri; Kiran Keshav; Baris E. Suzek; Scott Oster; Ian T. Foster (ICWS, 2008)

e-Science, caGrid, and Translational Biomedical Research. - Joel H. Saltz; Tahsin M. Kurç; Shannon Hastings; Stephen Langella; Scott Oster; David Ervin; Ashish Sharma 001; Tony Pan; Metin N. Gurcan; Justin Permar; Renato Ferreira 001; Philip R. O. Payne; et al. (Computer, 2008)

Combining the Power of Taverna and caGrid: Scientific Workflows that Enable Web-Scale Collaboration. - Wei Tan 001; Ian T. Foster; Ravi K. Madduri (IEEE Internet Comput., 2008)

Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research. - Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi K. Madduri; Joshua Phillips; Tahsin M. Kurç; Frank Siebenlist; Peter A. Covitz; Krishnakant Shanbhag; Ian T. Foster; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2008)

GridFTP GUI: An Easy and Efficient Way to Transfer Data in Grid. - Wantao Liu; Rajkumar Kettimuthu; Brian Tieman; Ravi K. Madduri; Bo Li 005; Ian T. Foster (GridNets, 2009)

Wrap Scientific Applications as WSRF Grid Services Using gRAVI. - Kyle Chard; Wei Tan 001; Joshua Boverhof; Ravi K. Madduri; Ian T. Foster (ICWS, 2009)

Scientific Workflows as Services in caGrid: A Taverna and gRAVI Approach. - Wei Tan 001; Kyle Chard; Dinanath Sulakhe; Ravi K. Madduri; Ian T. Foster; Stian Soiland-Reyes; Carole A. Goble (ICWS, 2009)

DataMover: A Lightweight, Extensible Data Movement Framework for Grid Environments. - Wantao Liu; Rajkumar Kettimuthu; Ravi K. Madduri (PDPTA, 2009)

caGrid Workflow Toolkit: A Taverna based workflow tool for cancer Grid. - Wei Tan 001; Ravi K. Madduri; Aleksandra Nenadic; Stian Soiland-Reyes; Dinanath Sulakhe; Ian T. Foster; Carole A. Goble (BMC Bioinform., 2010)

A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid. - Wei Tan 001; Paolo Missier; Ian T. Foster; Ravi K. Madduri; David De Roure; Carole A. Goble (Concurr. Comput. Pract. Exp., 2010)

Providing Map and GPS Assistance to Service Composition in Bioinformatics. - Wei Tan 001; Jia Zhang 001; Ravi K. Madduri; Ian T. Foster; David De Roure (IEEE SCC, 2011)

ServiceMap: Providing Map and GPS Assistance to Service Composition in Bioinformatics. - Wei Tan 001; Jia Zhang 001; Ravi K. Madduri; Ian T. Foster; David De Roure; Carole A. Goble (IEEE SCC, 2011)

Recommend-As-You-Go: A Novel Approach Supporting Services-Oriented Scientific Workflow Reuse. - Jia Zhang 001; Wei Tan 001; John Alexander 002; Ian T. Foster; Ravi K. Madduri (IEEE SCC, 2011)

Improving the efficiency of subset queries on raster images. - Tanu Malik; Neil Best; Joshua Elliott; Ravi K. Madduri; Ian T. Foster (GIS-HPDGIS, 2011)

Toward Semantics Empowered Biomedical Web Services. - Jia Zhang 001; Ravi K. Madduri; Wei Tan 001; Kevin Deichl; John Alexander 002; Ian T. Foster (ICWS, 2011)

Enabling collaborative research using the Biomedical Informatics Research Network (BIRN). - Karl G. Helmer; José Luis Ambite; Joseph Ames; Rachana Ananthakrishnan; Gully Burns; Ann L. Chervenak; Ian T. Foster; Lee Liming; David B. Keator; Fabio Macciardi; Ravi K. Madduri; John-Paul Navarro; et al. (J. Am. Medical Informatics Assoc., 2011)

Deploying Bioinformatics Workflows on Clouds with Galaxy and Globus Provision. - Bo Liu 010; Borja Sotomayor; Ravi K. Madduri; Kyle Chard; Ian T. Foster (SC Companion, 2012)

Enabling multi-task computation on Galaxy-based gateways using swift. - Ketan Maheshwari; Alex A. Rodriguez; David Kelly; Ravi K. Madduri; Justin M. Wozniak; Michael Wilde; Ian T. Foster (CLUSTER, 2013)

Science as a service: how on-demand computing can accelerate discovery. - Ian T. Foster; Ravi K. Madduri (ScienceCloud@HPDC, 2013)

Distributed tools deployment and management for multiple galaxy instances in globus genomics. - Dinanath Sulakhe; Alex A. Rodriguez; Nick Prozorovsky; Nilesh Kavthekar; Ravi K. Madduri; Amol Parikh; Paul Dave; Lukasz Lacinski; Ian T. Foster (WORKS@SC, 2013)

Experiences in building a next-generation sequencing analysis service using galaxy, globus online and Amazon web service. - Ravi K. Madduri; Paul Dave; Dinanath Sulakhe; Lukasz Lacinski; Bo Liu 024; Ian T. Foster (XSEDE, 2013)

A cloud-based image analysis gateway for traumatic brain injury research. - Kyle Chard; Ravi K. Madduri; Xia Jiang; Farid Dahi; Michael W. Vannier; Ian T. Foster (GCE@SC, 2014)

PDACS: a portal for data analysis services for cosmological simulations. - Ryan Chard; Saba Sehrish; Alex A. Rodriguez; Ravi K. Madduri; Thomas D. Uram; Marc F. Paterno; Katrin Heitmann; Shreyas Cholia; Jim Kowalkowski; Salman Habib 002 (GCE@SC, 2014)

Experiences building Globus Genomics: a next-generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services. - Ravi K. Madduri; Dinanath Sulakhe; Lukasz Lacinski; Bo Liu 010; Alex A. Rodriguez; Kyle Chard; Utpal J. Dave; Ian T. Foster (Concurr. Comput. Pract. Exp., 2014)

Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses. - Bo Liu 010; Ravi K. Madduri; Borja Sotomayor; Kyle Chard; Lukasz Lacinski; Utpal J. Dave; Jianqiang Li 002; Chunchen Liu; Ian T. Foster (J. Biomed. Informatics, 2014)

Cost-Aware Elastic Cloud Provisioning for Scientific Workloads. - Ryan Chard; Kyle Chard; Kris Bubendorfer; Lukasz Lacinski; Ravi K. Madduri; Ian T. Foster (CLOUD, 2015)

Cost-Aware Cloud Provisioning. - Ryan Chard; Kyle Chard; Kris Bubendorfer; Lukasz Lacinski; Ravi K. Madduri; Ian T. Foster (e-Science, 2015)

Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes. - Vassily Trubetskoy; Alex A. Rodriguez; Uptal J. Dave; Nicholas Campbell; Emily L. Crawford; Edwin H. Cook Jr.; James S. Sutcliffe; Ian T. Foster; Ravi K. Madduri; Nancy J. Cox; Lea K. Davis (Bioinform., 2015)

The Globus Galaxies platform: delivering science gateways as a service. - Ravi K. Madduri; Kyle Chard; Ryan Chard; Lukasz Lacinski; Alex A. Rodriguez; Dinanath Sulakhe; David Kelly; Utpal J. Dave; Ian T. Foster (Concurr. Comput. Pract. Exp., 2015)

FACE-IT: A science gateway for food security research. - Raffaele Montella; David Kelly; Wei Xiong 003; Alison Brizius; Joshua Elliott; Ravi K. Madduri; Ketan Maheshwari; Cheryl H. Porter; Peter Vilter; Michael Wilde; Meng Zhang 007; Ian T. Foster (Concurr. Comput. Pract. Exp., 2015)

PDACS: A Portal for Data Analysis Services for Cosmological Simulations. - Ravi K. Madduri; Alex A. Rodriguez; Thomas D. Uram; Katrin Heitmann; Tanu Malik; Saba Sehrish; Ryan Chard; Shreyas Cholia; Marc F. Paterno; Jim Kowalkowski; Salman Habib 002 (Comput. Sci. Eng., 2015)

Big biomedical data as the key resource for discovery science. - Arthur W. Toga; Ian T. Foster; Carl Kesselman; Ravi K. Madduri; Kyle Chard; Eric W. Deutsch; Nathan D. Price 001; Gustavo Glusman; Benjamin D. Heavner; Ivo D. Dinov; Joseph Ames; John D. Van Horn; et al. (J. Am. Medical Informatics Assoc., 2015)

I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets. - Kyle Chard; Mike D'Arcy; Benjamin D. Heavner; Ian T. Foster; Carl Kesselman; Ravi K. Madduri; Alexis A. Rodriguez; Stian Soiland-Reyes; Carole A. Goble; Kristi Clark; Eric W. Deutsch; Ivo D. Dinov; et al. (IEEE BigData, 2016)

An Automated Tool Profiling Service for the Cloud. - Ryan Chard; Kyle Chard; Bryan C. K. Ng; Kris Bubendorfer; Alex A. Rodriguez; Ravi K. Madduri; Ian T. Foster (CCGrid, 2016)

Applications of the FACE-IT Data Science Portal and Workflow Engine for Operational Food Quality Prediction and Assessment: Mussel Farm Monitoring in the Bay of Napoli, Italy. - Raffaele Montella; Alison Brizius; Diana Di Luccio; Cheryl H. Porter; Joshua Elliott; Ravi K. Madduri; David Kelly; Angelo Riccio; Ian T. Foster (WORKS@SC, 2016)

Science as a Service [Guest editors' introduction]. - Ravi K. Madduri; Ian T. Foster (Comput. Sci. Eng., 2016)

Cost-Aware Cloud Profiling, Prediction, and Provisioning as a Service. - Ryan Chard; Kyle Chard; Rich Wolski; Ravi K. Madduri; Bryan C. K. Ng; Kris Bubendorfer; Ian T. Foster (IEEE Cloud Comput., 2017)

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. - Kathleen M. Jagodnik; Simon Koplev; Sherry L. Jenkins; Lucila Ohno-Machado; Benedict Paten; Stephan C. Schürer; Michel Dumontier; Ruben Verborgh; Alex A. T. Bui; Peipei Ping; Neil J. McKenna; Ravi K. Madduri; et al. (J. Biomed. Informatics, 2017)

Reproducible big data science: A case study in continuous FAIRness. - Ravi K. Madduri; Kyle Chard; Michel D'Arcy; Segun Jung; Alexis A. Rodriguez; Dinanath Sulakhe; Eric Deutsch; Cory C. Funk; Benjamin D. Heavner; Matthew A. Richards; Paul Shannon; Gustavo Glusman; et al. (RO, 2018)

Scalable pCT Image Reconstruction Delivered as a Cloud Service. - Ryan Chard; Ravi K. Madduri; Nicholas T. Karonis; Kyle Chard; Kirk L. Duffin; Caesar E. Ordoñez; Thomas D. Uram; Justin Fleischauer; Ian T. Foster; Michael E. Papka; John Winans (IEEE Trans. Cloud Comput., 2018)

Big Data Bags: A Scalable Packaging Format for Science. - Mike D'Arcy; Kyle Chard; Ian T. Foster; Carl Kesselman; Ravi K. Madduri; Nickolaus D. Saint; Rick Wagner (RO, 2019)

Using the FACE-IT portal and workflow engine for operational food quality prediction and assessment: An application to mussel farms monitoring in the Bay of Napoli, Italy. - Raffaele Montella; Alison Brizius; Diana Di Luccio; Cheryl H. Porter; Joshua Elliott; Ravi K. Madduri; David Kelly; Angelo Riccio; Ian T. Foster (Future Gener. Comput. Syst., 2020)

APPFL: Open-Source Software Framework for Privacy-Preserving Federated Learning. - Minseok Ryu; Youngdae Kim; Kibaek Kim; Ravi K. Madduri (IPDPS Workshops, 2022)

FAIR for AI: An interdisciplinary, international, inclusive, and diverse community building perspective. - Eliu A. Huerta; Ben Blaiszik; L. Catherine Brinson; Kristofer E. Bouchard; Daniel Diaz 003; Caterina Doglioni; Javier M. Duarte; Murali Emani; Ian T. Foster; Geoffrey C. Fox; Philip C. Harris; Lukas Heinrich; et al. (CoRR, 2022)

The Case for Optimized Edge-Centric Tractography at Scale. - Joseph Y. Moon; Pratik Mukherjee; Ravi K. Madduri; Amy J. Markowitz; Lanya T. Cai; Eva M. Palacios; Geoffrey T. Manley; Peer-Timo Bremer (Frontiers Neuroinformatics, 2022)

APPFLx: Providing Privacy-Preserving Cross-Silo Federated Learning as a Service. - Zilinghan Li; Shilan He; Pranshu Chaturvedi; Trung-Hieu Hoang; Minseok Ryu; Eliu A. Huerta; Volodymyr V. Kindratenko; Jordan D. Fuhrman; Maryellen L. Giger; Ryan Chard; Kibaek Kim; Ravi K. Madduri (e-Science, 2023)

Enabling End-to-End Secure Federated Learning in Biomedical Research on Heterogeneous Computing Environments with APPFLx. - Trung-Hieu Hoang; Jordan D. Fuhrman; Ravi K. Madduri; Miao Li; Pranshu Chaturvedi; Zilinghan Li; Kibaek Kim; Minseok Ryu; Ryan Chard; Eliu A. Huerta; Maryellen L. Giger (CoRR, 2023)

Privacy-Preserving Federated Learning for Science: Challenges and Research Directions. - Kibaek Kim; Krishnan Raghavan; Olivera Kotevska; Matthieu Dorier; Ravi K. Madduri; Minseok Ryu; Todd S. Munson; Robert Ross; Thomas Flynn 001; Ai Kagawa; Byung-Jun Yoon; Christian Engelmann; et al. (IEEE Big Data, 2024)

FedCompass: Efficient Cross-Silo Federated Learning on Heterogeneous Client Devices Using a Computing Power-Aware Scheduler. - Zilinghan Li; Pranshu Chaturvedi; Shilan He; Han Chen; Gagandeep Singh; Volodymyr V. Kindratenko; Eliu A. Huerta; Kibaek Kim; Ravi K. Madduri (ICLR, 2024)

AI Data Readiness Inspector (AIDRIN) for Quantitative Assessment of Data Readiness for AI. - Kaveen Hiniduma; Suren Byna; Jean Luca Bez; Ravi K. Madduri (SSDBM, 2024)

Advances in Privacy Preserving Federated Learning to Realize a Truly Learning Healthcare System. - Ravi K. Madduri; Zilinghan Li; Tarak Nandi; Kibaek Kim; Minseok Ryu; Alex Rodriguez (TPS-ISA, 2024)

Advances in APPFL: A Comprehensive and Extensible Federated Learning Framework. - Zilinghan Li; Shilan He; Ze Yang; Minseok Ryu; Kibaek Kim; Ravi K. Madduri (CoRR, 2024)

Gen-SIS: Generative Self-augmentation Improves Self-supervised Learning. - Varun Belagali; Srikar Yellapragada; Alexandros Graikos; Saarthak Kapse; Zilinghan Li; Tarak Nath Nandi; Ravi K. Madduri; Prateek Prasanna; Joel H. Saltz; Dimitris Samaras (CoRR, 2024)

Secure Federated Learning Across Heterogeneous Cloud and High-Performance Computing Resources: A Case Study on Federated Fine-Tuning of LLaMA 2. - Zilinghan Li; Shilan He; Pranshu Chaturvedi; Volodymyr V. Kindratenko; Eliu A. Huerta; Kibaek Kim; Ravi K. Madduri (Comput. Sci. Eng., 2024)

MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline. - Lanya T. Cai; Joseph Y. Moon; Paul B. Camacho; Aaron T. Anderson; Won Jong Chwa; Bradley P. Sutton; Amy J. Markowitz; Eva M. Palacios; Alexis A. Rodriguez; Geoffrey T. Manley; Shivsundaram Shankar; Peer-Timo Bremer; et al. (Neuroinformatics, 2024)

Pathology Image Compression with Pre-trained Autoencoders. - Srikar Yellapragada; Alexandros Graikos; Kostas Triaridis; Zilinghan Li; Tarak Nath Nandi; Ravi K. Madduri; Prateek Prasanna; Joel H. Saltz; Dimitris Samaras (CoRR, 2025)

AIDRIN 2.0: A Framework to Assess Data Readiness for AI. - Kaveen Hiniduma; Dylan Ryan; Suren Byna; Jean Luca Bez; Ravi K. Madduri (CoRR, 2025)

FedCostAware: Enabling Cost-Aware Federated Learning on the Cloud. - Aditya Sinha; Zilinghan Li; Tingkai Liu; Volodymyr V. Kindratenko; Kibaek Kim; Ravi K. Madduri (CoRR, 2025)

CADRE: Customizable Assurance of Data Readiness in Privacy-Preserving Federated Learning. - Kaveen Hiniduma; Zilinghan Li; Aditya Sinha; Ravi K. Madduri; Suren Byna (CoRR, 2025)

PixCell: A generative foundation model for digital histopathology images. - Srikar Yellapragada; Alexandros Graikos; Zilinghan Li; Kostas Triaridis; Varun Belagali; Saarthak Kapse; Tarak Nath Nandi; Ravi K. Madduri; Prateek Prasanna; Tahsin M. Kurç; Rajarsi R. Gupta; Joel H. Saltz; et al. (CoRR, 2025)

Enhancing Clinical Models with Pseudo Data for De-identification. - Paul Landes; Aaron Chaise; Tarak Nath Nandi; Ravi K. Madduri (CoRR, 2025)

CDG-MAE: Learning Correspondences from Diffusion Generated Views. - Varun Belagali; Pierre Marza; Srikar Yellapragada; Zilinghan Li; Tarak Nath Nandi; Ravi K. Madduri; Joel H. Saltz; Stergios Christodoulidis; Maria Vakalopoulou; Dimitris Samaras (CoRR, 2025)