RNAi as a bioinformatics consumer. - Ravi Sachidanandam (Briefings Bioinform., 2005)

GObar: A Gene Ontology based analysis and visualization tool for gene sets. - Jason S. M. Lee; Gurpreet Katari; Ravi Sachidanandam (BMC Bioinform., 2005)

RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs. - Andrew J. Olson; Nihar Sheth; Jason S. Lee; G. J. Hannon; Ravi Sachidanandam (Nucleic Acids Res., 2006)

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context. - Jeremiah J. Faith; Andrew J. Olson; Timothy S. Gardner; Ravi Sachidanandam (BMC Bioinform., 2007)

Analysis of Large-Scale Sequencing of Small RNAs. - Andrew J. Olson; J. Brennecke; A. A. Aravin; G. J. Hannon; Ravi Sachidanandam (Pacific Symposium on Biocomputing, 2008)

Kismeth: Analyzer of plant methylation states through bisulfite sequencing. - Eyal Gruntman; Yijun Qi; R. Keith Slotkin; Ted Roeder; Robert A. Martienssen; Ravi Sachidanandam (BMC Bioinform., 2008)

Geoseq: a tool for dissecting deep-sequencing datasets. - James Gurtowski; Anthony Cancio; Hardik Shah; Chaya Levovitz; Ajish George; Robert Homann; Ravi Sachidanandam (BMC Bioinform., 2010)