A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors. - Ravi Vijaya Satya; Amar Mukherjee; Udaykumar Ranga (CSB, 2003)

PRUNER: Algorithms for Finding Monad Patterns in DNA Sequences. - Ravi Vijaya Satya; Amar Mukherjee (CSB, 2004)

Modified LZW Algorithm for Efficient Compressed Text Retrieval. - Nan Zhang 005; Tao Tao; Ravi Vijaya Satya; Amar Mukherjee (ITCC (2), 2004)

New Algorithms for Finding Monad Patterns in DNA Sequences. - Ravi Vijaya Satya; Amar Mukherjee (SPIRE, 2004)

An Efficient Algorithm for Perfect Phylogeny Haplotyping. - Ravi Vijaya Satya; Amar Mukherjee (CSB, 2005)

A Flexible Compressed Text Retrieval System Using a Modified LZW Algorithm. - Nan Zhang 005; Tao Tao; Ravi Vijaya Satya; Amar Mukherjee (DCC, 2005)

Search and Retrieval of Compressed Text. - Amar Mukherjee; Nan Zhang 005; Tao Tao; Ravi Vijaya Satya; Weifeng Sun (Adv. Comput., 2005)

Constructing Near-Perfect Phylogenies with multiple homoplasy events. - Ravi Vijaya Satya; Amar Mukherjee; Gabriela Alexe; Laxmi Parida; Gyan Bhanot (ISMB (Supplement of Bioinformatics), 2006)

Inferring Common Origins from mtDNA. - Ajay K. Royyuru; Gabriela Alexe; Daniel E. Platt; Ravi Vijaya Satya; Laxmi Parida; Saharon Rosset; Gyan Bhanot (RECOMB, 2006)

An Optimal Algorithm for Perfect Phylogeny Haplotyping. - Ravi Vijaya Satya; Amar Mukherjee (J. Comput. Biol., 2006)

A high-throughput pipeline for designing microarray-based pathogen diagnostic assays. - Ravi Vijaya Satya; Nela Zavaljevski; Kamal Kumar 002; Jaques Reifman (BMC Bioinform., 2008)

The Undirected Incomplete Perfect Phylogeny Problem. - Ravi Vijaya Satya; Amar Mukherjee (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

A high-throughput pipeline for the design of real-time PCR signatures. - Ravi Vijaya Satya; Kamal Kumar 002; Nela Zavaljevski; Jaques Reifman (BMC Bioinform., 2010)

Accelerating Biomedical Research in Designing Diagnostic Assays, Drugs, and Vaccines. - Anders Wallqvist; Nela Zavaljevski; Ravi Vijaya Satya; Rajkumar Bondugula; Valmik Desai; Xin Hu; Kamal Kumar 002; Michael S. Lee; In-Chul Yeh; Chenggang Yu; Jaques Reifman (Comput. Sci. Eng., 2010)

SNIT: SNP identification for strain typing. - Ravi Vijaya Satya; Nela Zavaljevski; Jaques Reifman (Source Code Biol. Medicine, 2011)

Thermodynamic Basis for the Emergence of Genomes during Prebiotic Evolution. - Hyung-June Woo 001; Ravi Vijaya Satya; Jaques Reifman (PLoS Comput. Biol., 2012)