Semantic Representation and Querying of caBIG Data Services. - E. Patrick Shironoshita; Ray M. Bradley; Yves R. Jean-Mary; Thomas J. Taylor; Michael T. Ryan; Mansur R. Kabuka (DILS, 2008)

Model Formulation: semCDI: A Query Formulation for Semantic Data Integration in caBIG. - E. Patrick Shironoshita; Yves R. Jean-Mary; Ray M. Bradley; Mansur R. Kabuka (J. Am. Medical Informatics Assoc., 2008)

semQA: SPARQL with Idempotent Disjunction. - E. Patrick Shironoshita; Yves R. Jean-Mary; Ray M. Bradley; Mansur R. Kabuka (IEEE Trans. Knowl. Data Eng., 2009)

Cancer Data Integration and Querying with GeneTegra. - E. Patrick Shironoshita; Yves R. Jean-Mary; Ray M. Bradley; Patricia Buendia; Mansur R. Kabuka (DILS, 2012)

Web-based Ontology Alignment with the GeneTegra Alignment Tool. - Nemanja Stojanovic; Ray M. Bradley; Sean Wilkinson; Mansur R. Kabuka; E. Patrick Shironoshita (SIMBig, 2017)

Patient Graph Deep Learning to Predict Breast Cancer Molecular Subtype. - Isaac Furtney; Ray M. Bradley; Mansur R. Kabuka (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)