Broad-Enrich: functional interpretation of large sets of broad genomic regions. - Raymond G. Cavalcante; Chee Lee; Ryan P. Welch; Snehal Patil; Terry E. Weymouth; Laura J. Scott; Maureen A. Sartor (Bioinform., 2014)

ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts. - Raymond G. Cavalcante; Snehal Patil; Terry E. Weymouth; Kestutis G. Bendinskas; Alla Karnovsky; Maureen A. Sartor (Bioinform., 2016)

annotatr: genomic regions in context. - Raymond G. Cavalcante; Maureen A. Sartor (Bioinform., 2017)