Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project. - Minjun Chen; Leming M. Shi; Reagan Kelly; Roger Perkins; Hong Fang; Weida Tong (BMC Bioinform., 2011)

Translating Clinical Findings into Knowledge in Drug Safety Evaluation - Drug Induced Liver Injury Prediction System (DILIps). - Zhichao Liu; Qiang Shi; Don Ding; Reagan Kelly; Hong Fang; Weida Tong (PLoS Comput. Biol., 2011)

Investigating drug repositioning opportunities in FDA drug labels through topic modeling. - Halil Bisgin; Zhichao Liu; Reagan Kelly; Hong Fang; Xiaowei Xu 001; Weida Tong (BMC Bioinform., 2012)

A systems approach for analysis of high content screening assay data with topic modeling. - Halil Bisgin; Minjun Chen; Yuping Wang; Reagan Kelly; Hong Fang; Xiaowei Xu 001; Weida Tong (BMC Bioinform., 2013)

A phenome-guided drug repositioning through a latent variable model. - Halil Bisgin; Zhichao Liu; Hong Fang; Reagan Kelly; Xiaowei Xu 001; Weida Tong (BMC Bioinform., 2014)

Of text and gene - using text mining methods to uncover hidden knowledge in toxicogenomics. - Mikyung Lee; Zhichao Liu; Reagan Kelly; Weida Tong (BMC Syst. Biol., 2014)

Automated Next Generation Sequencing Bioinformatics Pipelines for Pathogen Discovery and Surveillance. - Margaret Okomo-Adhiambo; Edward Ramos; Reagan Kelly; Yatish Jain; Roman L. Tatusov; Anna Montmayeur; Gregory Doho; Rachel L. Marine; Terry Fei Fan Ng; Adam Retchless; Steve Oberste; Paul Rota; et al. (BCB, 2017)