Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). - Juliane Fluck; Sumit Madan; Sam Ansari; Alpha Tom Kodamullil; Reagon Karki; Majid Rastegar-Mojarad; Natalie L. Catlett; William Hayes; Justyna Szostak; Julia Hoeng; Manuel C. Peitsch (Database J. Biol. Databases Curation, 2016)

Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment. - Daniel Domingo-Fernández; Alpha Tom Kodamullil; Anandhi Iyappan; Mufassra Naz; Mohammad Asif Emon; Tamara Raschka; Reagon Karki; Stephan Springstubbe; Christian Ebeling; Martin Hofmann-Apitius (Bioinform., 2017)

Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm. - Reagon Karki; Alpha Tom Kodamullil; Charles Tapley Hoyt; Martin Hofmann-Apitius (BMC Bioinform., 2019)

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology. - Daniel Domingo-Fernández; Shounak Baksi; Bruce Schultz; Yojana Gadiya; Reagon Karki; Tamara Raschka; Christian Ebeling; Martin Hofmann-Apitius; Alpha Tom Kodamullil (Bioinform., 2021)

Bridging between data and knowledge: New ways to better understand Alzheimer's Disease and Type 2 Diabetes comorbidity - Reagon Karki (2021)

Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities. - Christian Ohmann; Maria Panagiotopoulou; Steve Canham; Petr Holub; Kurt Majcen; Gary Saunders; Maddalena Fratelli; Jing Tang 002; Philip Gribbon; Reagon Karki; Mari Kleemola; Katja Moilanen; et al. (Int. J. Metadata Semant. Ontologies, 2023)

Curating, Collecting, and Cataloguing Global COVID-19 Datasets for the Aim of Predicting Personalized Risk. - Sepehr Golriz Khatami; Astghik Sargsyan; Maria Francesca Russo; Daniel Domingo-Fernández; Andrea Zaliani; Abish Kaladharan; Priya Sethumadhavan; Sarah Mubeen; Yojana Gadiya; Reagon Karki; Stephan Gebel; Ram Kumar Ruppa Surulinathan; et al. (Data, 2024)