Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis. - Li Chen 018; Jianhua Xuan; Rebecca B. Riggins; Yue Joseph Wang; Eric P. Hoffman; Robert Clarke (BIOCOMP, 2008)

Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information. - Ting Gong; Jianhua Xuan; Rebecca B. Riggins; Yue Joseph Wang; Eric P. Hoffman; Robert Clarke (BIOCOMP, 2008)

Network-Constrained Support Vector Machine for Classification. - Li Chen 018; Jianhua Xuan; Yue Joseph Wang; Rebecca B. Riggins; Robert Clarke (ICMLA, 2008)

Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information. - Ting Gong; Jianhua Xuan; Li Chen 018; Rebecca B. Riggins; Yue Joseph Wang; Eric P. Hoffman; Robert Clarke (ISBRA, 2008)

A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks. - Ting Gong; Jianhua Jason Xuan; Rebecca B. Riggins; Robert Clarke (IJCBS, 2009)

Differential dependency network analysis to identify condition-specific topological changes in biological networks. - Bai Zhang; Huai Li; Rebecca B. Riggins; Ming Zhan; Jianhua Xuan; Zhen Zhang; Eric P. Hoffman; Robert Clarke; Yue Joseph Wang (Bioinform., 2009)

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis. - Li Chen 018; Jianhua Xuan; Yue Joseph Wang; Eric P. Hoffman; Rebecca B. Riggins; Robert Clarke (Int. J. Comput. Biol. Drug Des., 2009)

Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic. - Jinghua Gu; Jianhua Xuan; Yue Joseph Wang; Rebecca B. Riggins; Robert Clarke (ICMLA, 2010)

Multilevel support vector regression analysis to identify condition-specific regulatory networks. - Li Chen 018; Jianhua Xuan; Rebecca B. Riggins; Yue Joseph Wang; Eric P. Hoffman; Robert Clarke (Bioinform., 2010)

Motif-guided sparse decomposition of gene expression data for regulatory module identification. - Ting Gong; Jianhua Xuan; Li Chen 018; Rebecca B. Riggins; Huai Li; Eric P. Hoffman; Robert Clarke; Yue Joseph Wang (BMC Bioinform., 2011)

Identifying cancer biomarkers by network-constrained support vector machines. - Li Chen 018; Jianhua Xuan; Rebecca B. Riggins; Robert Clarke; Yue Joseph Wang (BMC Syst. Biol., 2011)

Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. - Xi Chen 056; Chen Wang 001; Ayesha N. Shajahan; Rebecca B. Riggins; Robert Clarke; Jianhua Xuan (ISBRA, 2012)

Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis. - Xi Chen 056; Jianhua Xuan; Chen Wang 001; Ayesha N. Shajahan; Rebecca B. Riggins; Robert Clarke (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic. - Jinghua Gu; Jianhua Xuan; Rebecca B. Riggins; Li Chen 018; Yue Joseph Wang; Robert Clarke (Bioinform., 2014)