Identifying structural variants using linked-read sequencing data. - Rebecca Elyanow; Hsin-Ta Wu; Benjamin J. Raphael (Bioinform., 2018)

netNMF-sc: A Network Regularization Algorithm for Dimensionality Reduction and Imputation of Single-Cell Expression Data. - Rebecca Elyanow; Bianca Dumitrascu; Barbara E. Engelhardt; Benjamin J. Raphael (RECOMB, 2019)

NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks. - Matthew A. Reyna; Uthsav Chitra; Rebecca Elyanow; Benjamin J. Raphael (J. Comput. Biol., 2021)

AIRIVA: A Deep Generative Model of Adaptive Immune Repertoires. - Melanie F. Pradier; Niranjani Prasad; Paidamoyo Chapfuwa; Sahra Ghalebikesabi; Maximilian Ilse; Steven Woodhouse; Rebecca Elyanow; Javier Zazo; Javier González Hernández; Julia Greissl; Edward Meeds (MLHC, 2023)

AIRIVA: A Deep Generative Model of Adaptive Immune Repertoires. - Melanie F. Pradier; Niranjani Prasad; Paidamoyo Chapfuwa; Sahra Ghalebikesabi; Max Ilse; Steven Woodhouse; Rebecca Elyanow; Javier Zazo; Javier González Hernández; Julia Greissl; Edward Meeds (CoRR, 2023)