PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations. - Nadav Rappoport; Menachem Fromer; Regev Schweiger; Michal Linial (Nucleic Acids Res., 2010)

Generative probabilistic models for protein-protein interaction networks - the biclique perspective. - Regev Schweiger; Michal Linial; Nathan Linial (Bioinform., 2011)

A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference. - Elior Rahmani; Regev Schweiger; Liat Shenhav; Eleazar Eskin; Eran Halperin (RECOMB, 2017)

GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. - Elior Rahmani; Reut Yedidim; Liat Shenhav; Regev Schweiger; Omer Weissbrod; Noah Zaitlen; Eran Halperin (Bioinform., 2017)

Association testing of bisulfite-sequencing methylation data via a Laplace approximation. - Omer Weissbrod; Elior Rahmani; Regev Schweiger; Saharon Rosset; Eran Halperin (Bioinform., 2017)

Tensor Composition Analysis Detects Cell-Type Specific Associations in Epigenetic Studies. - Elior Rahmani; Regev Schweiger; Saharon Rosset; Sriram Sankararaman; Eran Halperin (RECOMB, 2018)

Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. - Regev Schweiger; Eyal Fisher; Elior Rahmani; Liat Shenhav; Saharon Rosset; Eran Halperin (J. Comput. Biol., 2018)

Probabilistic Models in Genetics - Regev Schweiger (2018)

FactorialHMM: fast and exact inference in factorial hidden Markov models. - Regev Schweiger; Yaniv Erlich; Shai Carmi (Bioinform., 2019)