Revealing sequence variation patterns in rice with machine learning methods. - Regina Bohnert; Georg Zeller; Richard M. Clark; Kevin L. Childs; Victor Jun M. Ulat; Renee Stokowski; Dennis Ballinger; Kelly Frazer; David Cox; Richard M. Bruskiewich; C. Robin Buell; Jan Leach; et al. (BMC Bioinform., 2008)

Transcript quantification with RNA-Seq data. - Regina Bohnert; Jonas Behr; Gunnar Rätsch (BMC Bioinform., 2009)

Next generation genome annotation with mGene.ngs. - Jonas Behr; Regina Bohnert; Georg Zeller; Gabriele Beate Schweikert; Lisa Hartmann; Gunnar Rätsch (BMC Bioinform., 2010)

rQuant.web: a tool for RNA-Seq-based transcript quantitation. - Regina Bohnert; Gunnar Rätsch (Nucleic Acids Res., 2010)

Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. - Sebastian J. Schultheiß; Géraldine Jean; Jonas Behr; Regina Bohnert; Philipp Drewe; Nico Görnitz; André Kahles; Pramod Mudrakarta; Vipin T. Sreedharan; Georg Zeller; Gunnar Rätsch (BMC Bioinform., 2011)

Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis. - Vipin T. Sreedharan; Sebastian J. Schultheiß; Géraldine Jean; André Kahles; Regina Bohnert; Philipp Drewe; Pramod Mudrakarta; Nico Görnitz; Georg Zeller; Gunnar Rätsch (Bioinform., 2014)

Oqtans: a multifunctional workbench for RNA-seq data analysis. - Vipin T. Sreedharan; Sebastian J. Schultheiß; Géraldine Jean; André Kahles; Regina Bohnert; Philipp Drewe; Pramod Mudrakarta; Nico Görnitz; Georg Zeller; Gunnar Rätsch (BMC Bioinform., 2014)

Reliability of algorithmic somatic copy number alteration detection from targeted capture data. - Nora Rieber; Regina Bohnert; Ulrike Ziehm; Gunther Jansen (Bioinform., 2017)