The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data. - Regina Samaga; Julio Saez-Rodriguez; Leonidas G. Alexopoulos; Peter K. Sorger; Steffen Klamt (PLoS Comput. Biol., 2009)

Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. - Regina Samaga; Axel von Kamp; Steffen Klamt (J. Comput. Biol., 2010)

The Process-Interaction-Model: a common representation of rule-based and logical models allows studying signal transduction on different levels of detail. - Katrin Kolczyk; Regina Samaga; Holger Conzelmann; Sebastian Mirschel; Carsten Conradi (BMC Bioinform., 2012)

Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction Graphs. - Ioannis N. Melas; Regina Samaga; Leonidas G. Alexopoulos; Steffen Klamt (PLoS Comput. Biol., 2013)

Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling. - Lorenza Alice D'Alessandro; Regina Samaga; Tim Maiwald; Seong-Hwan Rho; Sandra Bonefas; Andreas Raue; Nao Iwamoto; Alexandra Kienast; Katharina Waldow; Rene Meyer; Marcel Schilling; Jens Timmer; et al. (PLoS Comput. Biol., 2015)

Qualitative and semi-quantitative analysis of signal transduction networks. - Regina Samaga (Shaker Verlag, 2018)