Dendroscope: An interactive viewer for large phylogenetic trees. - Daniel H. Huson; Daniel C. Richter; Christian Rausch; Tobias Dezulian; Markus Franz; Regula Rupp (BMC Bioinform., 2007)

Summarizing Multiple Gene Trees Using Cluster Networks. - Daniel H. Huson; Regula Rupp (WABI, 2008)

Computing galled networks from real data. - Daniel H. Huson; Regula Rupp; Vincent Berry; Philippe Gambette; Christophe Paul (Bioinform., 2009)

Phylogenetic Networks - Concepts, Algorithms and Applications. - Daniel H. Huson; Regula Rupp; Céline Scornavacca (Cambridge University Press, 2010)

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters. - Leo van Iersel; Steven Kelk; Regula Rupp; Daniel H. Huson (Bioinform., 2010)