On the modelling and analysis of the regulatory network of dengue virus pathogenesis and clearance. - Babar Aslam; Jamil Ahmad; Amjad Ali 001; Rehan Zafar Paracha; Samar Hayat Khan Tareen; Umar Khan Niazi; Tariq Saeed (Comput. Biol. Chem., 2014)

Insilico study of anti-carcinogenic lysyl oxidase-like 2 inhibitors. - Syed Aun Muhammad; Amjad Ali 001; Tariq Ismail; Rehan Zafar Paracha; Umair Ilyas; Jamil Ahmad (Comput. Biol. Chem., 2014)

Structural evaluation of BTK and PKCδ mediated phosphorylation of MAL at positions Tyr86 and Tyr106. - Rehan Zafar Paracha; Amjad Ali 001; Jamil Ahmad; Riaz Hussain; Umar Khan Niazi; Syed Aun Muhammad (Comput. Biol. Chem., 2014)

Structural characterization of ANGPTL8 (betatrophin) with its interacting partner lipoprotein lipase. - Amnah Siddiqa; Jamil Ahmad; Amjad Ali 001; Rehan Zafar Paracha; Zurah Bibi; Babar Aslam (Comput. Biol. Chem., 2016)

Modeling and analysis of the signaling crosstalk of PI3K, AMPK and MAPK with Timed Hybrid Petri Nets approach. - Zurah Bibi; Jamil Ahmad; Rehan Zafar Paracha; Amnah Siddiqa (ICCSA (7), 2017)

Parameter estimation of qualitative biological regulatory networks on high performance computing hardware. - Muhammad Tariq Saeed; Jamil Ahmad; Jan Baumbach; Josch Pauling; Aamir Shafi; Rehan Zafar Paracha; Asad Hayat; Amjad Ali 001 (BMC Syst. Biol., 2018)

3D Structure Determination and Validation of mTORC2 using Computational Modeling Techniques. - Zurah Bibi; Jamil Ahmad; Rehan Zafar Paracha; Amnah Siddiqa (ICCSA (7), 2019)

Investigating the Mechanical Strength of an Endodontically Treated Human Canine using Image-based Finite Element Analysis. - Zartasha Mustansar; Wajeeha Batool; Saadia Talay; Adnan Hafeez; Rehan Zafar Paracha; Mohammad Junaid Iqbal Khan; Ahmad Madarati (ICCMS, 2021)

Enhanced accuracy with Segmentation of Colorectal Polyp using NanoNetB, and Conditional Random Field Test-Time Augmentation. - Muhammad Sajjad Hussain; Umer Asgher; Sajid Nisar; Vladimir Socha; Arslan Shaukat; Jinhui Wang; Tian Feng; Rehan Zafar Paracha; Muhammad Ali Khan (Frontiers Robotics AI, 2024)

Discovering promising drug candidates for Parkinson's disease: integrating miRNA and DEG analysis with molecular dynamics and MMPBSA. - Bisma Ishtiaq; Rehan Zafar Paracha; Maryum Nisar; Saima Ejaz; Zamir Hussain (J. Comput. Aided Mol. Des., 2025)