An analytical pipeline for genomic representations used for cytosine methylation studies. - Reid F. Thompson; Mark Reimers; Batbayar Khulan; Mathieu Gissot; Todd A. Richmond; Quan Chen; Xin Zheng; Kami Kim; John M. Greally (Bioinform., 2008)

A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry. - Reid F. Thompson; Masako Suzuki; Kevin W. Lau; John M. Greally (Bioinform., 2009)

A multidimensional analog to the Burrows-Wheeler transform. - Abhinav Nellore; Austin Nguyen; Reid F. Thompson (CoRR, 2019)

neoepiscope improves neoepitope prediction with multivariant phasing. - Mary A Wood; Austin Nguyen; Adam J. Struck; Kyle Ellrott; Abhinav Nellore; Reid F. Thompson (Bioinform., 2020)

Validity of Veterans Health Administration structured data to determine accurate smoking status. - Sara E. Golden; Elizabeth R. Hooker; Sarah Shull; Matthew Howard; Kristina Crothers; Reid F. Thompson; Christopher G. Slatore (Health Informatics J., 2020)

An Invertible Transform for Efficient String Matching in Labeled Digraphs. - Abhinav Nellore; Austin Nguyen; Reid F. Thompson (CPM, 2021)

pepsickle rapidly and accurately predicts proteasomal cleavage sites for improved neoantigen identification. - Benjamin R. Weeder; Mary A Wood; Ellysia Li; Abhinav Nellore; Reid F. Thompson (Bioinform., 2021)

Generalization is not a universal guarantee: Estimating similarity to training data with an ensemble out-of-distribution metric. - W. Max Schreyer; Christopher Anderson; Reid F. Thompson (CoRR, 2025)