MultiPLX: automatic grouping and evaluation of PCR primers. - Lauris Kaplinski; Reidar Andreson; Tarmo Puurand; Maido Remm (Bioinform., 2005)

GENOMEMASKER package for designing unique genomic PCR primers. - Reidar Andreson; Eric Reppo; Lauris Kaplinski; Maido Remm (BMC Bioinform., 2006)

SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes. - Reidar Andreson; Tarmo Puurand; Maido Remm (Nucleic Acids Res., 2006)

Primer3_masker: integrating masking of template sequence with primer design software. - Triinu Koressaar; Maarja Lepamets; Lauris Kaplinski; Kairi Raime; Reidar Andreson; Maido Remm (Bioinform., 2018)