Remediation of the protein data bank archive. - Kim Henrick; Zukang Feng; Wolfgang Bluhm; Dimitris Dimitropoulos; Jurgen F. Doreleijers; Shuchismita Dutta; Judith L. Flippen-Anderson; John M. C. Ionides; Chisa Kamada; Eugene Krissinel; Catherine L. Lawson; John L. Markley; et al. (Nucleic Acids Res., 2008)

PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan. - Akira R. Kinjo; Reiko Yamashita; Haruki Nakamura (Database J. Biol. Databases Curation, 2010)

SeSAW: balancing sequence and structural information in protein functional mapping. - Daron M. Standley; Reiko Yamashita; Akira R. Kinjo; Hiroyuki Toh; Haruki Nakamura (Bioinform., 2010)

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format. - Akira R. Kinjo; Hirofumi Suzuki; Reiko Yamashita; Yasuyo Ikegawa; Takahiro Kudou; Reiko Igarashi; Yumiko Kengaku; Hasumi Cho; Daron M. Standley; Atsushi Nakagawa; Haruki Nakamura (Nucleic Acids Res., 2012)