Data and knowlage based experimental design for bioprocess optimization. - Reinhard Guthke; Wolfgang Schmidt-Heck; Peter Müller; Heike Rodig; Ralph Berkholz (German Conference on Bioinformatics, 1999)

Data mining based hybrid modelling and experimental design for bioprocess optimisation. - Reinhard Guthke; Wolfgang Schmidt-Heck; Ralph Berkholz (EUSFLAT Conf., 2001)

Gene Expression Data Mining for Functional Genomics using Fuzzy Technology. - Reinhard Guthke; Wolfgang Schmidt-Heck; Daniel Hahn; Michael Pfaff (Advances in Computational Intelligence and Learning, 2002)

Network Analysis of the Kinetics of Amino Acid Metabolism in a Liver Cell Bioreactor. - Wolfgang Schmidt-Heck; Katrin Zeilinger; Michael Pfaff; Susanne Töpfer; Dominik Driesch; Gesine Pless; Peter Neuhaus; Joerg C. Gerlach; Reinhard Guthke (ISBMDA, 2004)

Prediction of the Performance of Human Liver Cell Bioreactors by Donor Organ Data. - Wolfgang Schmidt-Heck; Katrin Zeilinger; Gesine Pless; Joerg C. Gerlach; Michael Pfaff; Reinhard Guthke (ISBMDA, 2005)

Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection. - Reinhard Guthke; Ulrich Möller; Martin Hoffmann 003; Frank Thies; Susanne Töpfer (Bioinform., 2005)

Dynamic Network Reconstruction from Gene Expression Data Describing the Effect of LiCl Stimulation on Hepatocytes. - Sebastian Zellmer; Wolfgang Schmidt-Heck; F. Gaunitz; A. Baldysiak-Figiel; Reinhard Guthke; Rolf Gebhardt (J. Integr. Bioinform., 2005)

Dynamic Model of Amino Acid and Carbohydrate Metabolism in Primary Human Liver Cells. - Reinhard Guthke; Wolfgang Schmidt-Heck; Gesine Pless; Rolf Gebhardt; Michael Pfaff; Joerg C. Gerlach; Katrin Zeilinger (ISBMDA, 2006)

Discovery of Gene Regulatory Networks in Aspergillus fumigatus . - Reinhard Guthke; Olaf Kniemeyer; Daniela Albrecht; Axel A. Brakhage; Ulrich Möller (KDECB, 2006)

The Net Gene rator Algorithm: Reconstruction of Gene Regulatory Networks. - Susanne Töpfer; Reinhard Guthke; Dominik Driesch; Dirk Woetzel; Michael Pfaff (KDECB, 2006)

Convergence of the proteomic pattern in cancer. - Ute Müller; Günther Ernst; Christian Melle; Reinhard Guthke; Ferdinand von Eggeling (Bioinform., 2006)

Integration of Transcriptome and Proteome Data from Human-Pathogenic Fungi by Using a Data Warehouse. - Daniela Albrecht; Olaf Kniemeyer; Axel A. Brakhage; Matthias Berth; Reinhard Guthke (J. Integr. Bioinform., 2007)

Constructing a Knowledge Base for Gene Regulatory Dynamics by Formal Concept Analysis Methods. - Johannes Wollbold; Reinhard Guthke; Bernhard Ganter (AB, 2008)

Gene regulatory network inference: Data integration in dynamic models - A review. - Michael Hecker; Sandro Lambeck; Susanne Töpfer; Eugene P. van Someren; Reinhard Guthke (Biosyst., 2009)

Integrative modeling of transcriptional regulation in response to antirheumatic therapy. - Michael Hecker; Robert Hermann Goertsches; Robby Engelmann; Hans-Jürgen Thiesen; Reinhard Guthke (BMC Bioinform., 2009)

Adapted Boolean network models for extracellular matrix formation. - Johannes Wollbold; René Huber; Dirk Pohlers; Dirk Koczan; Reinhard Guthke; Raimund W. Kinne; Ulrike Gausmann (BMC Syst. Biol., 2009)

Network Inference by Considering Multiple Objectives: Insights from In Vivo Transcriptomic Data Generated by a Synthetic Network. - Sandro Lambeck; Andreas Dräger; Reinhard Guthke (BIOCOMP, 2010)

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. - Christoph Kaleta; Anna-Katharina Göhler; Stefan Schuster; Knut Jahreis; Reinhard Guthke; Swetlana Nikolajewa (BMC Syst. Biol., 2010)

Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells. - Jörg Linde; Duncan Wilson; Bernhard Hube; Reinhard Guthke (BMC Syst. Biol., 2010)

More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli. - Anna-Katharina Göhler; Öznur Kökpinar; Wolfgang Schmidt-Heck; Robert Geffers; Reinhard Guthke; Ursula Rinas; Stefan Schuster; Knut Jahreis; Christoph Kaleta (BMC Syst. Biol., 2011)

In Silico Evidence for Gluconeogenesis from Fatty Acids in Humans. - Christoph Kaleta; Luis F. de Figueiredo; Sarah Werner; Reinhard Guthke; Michael Ristow; Stefan Schuster (PLoS Comput. Biol., 2011)

Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach. - Jörg Linde; Peter Hortschansky; Eugen Fazius; Axel A. Brakhage; Reinhard Guthke; Hubertus Haas (BMC Syst. Biol., 2012)

The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes. - Sebastian Vlaic; Wolfgang Schmidt-Heck; Madlen Matz-Soja; Eugenia Marbach; Jörg Linde; Anke Meyer-Baese; Sebastian Zellmer; Reinhard Guthke; Rolf Gebhardt (BMC Syst. Biol., 2012)

Different Stimuli for Inference of Gene Regulatory Network in Rheumatoid Arthritis. - Peter Kupfer; Sebastian Vlaic; René Huber; Raimund W. Kinne; Reinhard Guthke (BIOINFORMATICS, 2013)

Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator V2.0. - Michael Weber; Sebastian Henkel; Sebastian Vlaic; Reinhard Guthke; Everardus J. van Zoelen; Dominik Driesch (BMC Syst. Biol., 2013)

Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation. - Michael Weber; Ana M. Sotoca; Peter Kupfer; Reinhard Guthke; Everardus J. van Zoelen (BMC Syst. Biol., 2013)

Within-host influenza dynamics: A small-scale mathematical modeling approach. - Himanshu Manchanda; Nora Seidel; Andi Krumbholz; Andreas Sauerbrei; Michaela Schmidtke; Reinhard Guthke (Biosyst., 2014)

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species. - Steffen Priebe; Christian Kreisel; Fabian Horn; Reinhard Guthke; Jörg Linde (Bioinform., 2015)

Inference of Predictive Phospho-regulatory Networks from LC-MS/MS Phosphoproteomics Data. - Sebastian Vlaic; Robert Altwasser; Peter Kupfer; Carol L. Nilsson; Mark R. Emmett; Anke Meyer-Baese; Reinhard Guthke (BIOINFORMATICS, 2016)

Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin. - Theresia Conrad; Olaf Kniemeyer; Sebastian Henkel; Thomas Krüger; D. J. Mattern; Vito Valiante; Reinhard Guthke; I. D. Jacobsen; Axel A. Brakhage; Sebastian Vlaic; Jörg Linde (BMC Syst. Biol., 2018)