The Human Genome and High Performance Computing in Molecular Biology. - Chris Sander; Reinhard Schneider 002; Pieter F. W. Stouten (Supercomputer, 1992)

The HSSP data base of protein structure-sequence alignments. - Chris Sander; Reinhard Schneider 002 (Nucleic Acids Res., 1993)

Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy. - Burkhard Rost; Chris Sander; Reinhard Schneider 002 (HICSS (5), 1994)

GeneQuiz: A Workbench for Sequence Analysis. - Michael Scharf; Reinhard Schneider 002; Georg Casari; Peer Bork; Alfonso Valencia; Christos A. Ouzounis; Chris Sander (ISMB, 1994)

PHD - an automatic mail server for protein secondary structure prediction. - Burkhard Rost; Chris Sander; Reinhard Schneider 002 (Comput. Appl. Biosci., 1994)

Sequenz und Sequenz-Struktur: Vergleiche und deren Anwendung für die Struktur- und Funktionsvorhersage von Proteinen. - Reinhard Schneider 002 (1994)

The HSSP database of protein structure-sequence alignments. - Reinhard Schneider 002; Chris Sander (Nucleic Acids Res., 1996)

Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. - Miguel A. Andrade; Georg Casari; Antoine de Daruvar; Chris Sander; Reinhard Schneider 002; Javier Tamames; Alfonso Valencia; Christos A. Ouzounis (Comput. Appl. Biosci., 1997)

The HSSP database of protein structure-sequence alignments. - Reinhard Schneider 002; Antoine de Daruvar; Chris Sander (Nucleic Acids Res., 1997)

The HSSP database of protein structure-sequence alignments and family profiles. - Chris Dodge; Reinhard Schneider 002; Chris Sander (Nucleic Acids Res., 1998)

A survey of visualization tools for biological network analysis. - Georgios A. Pavlopoulos; Anna-Lynn Wegener; Reinhard Schneider 002 (BioData Min., 2008)

Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. - Adriano Barbosa-Silva; Venkata P. Satagopam; Reinhard Schneider 002; José Miguel Ortega (BMC Bioinform., 2008)

Arena3D: visualization of biological networks in 3D. - Georgios A. Pavlopoulos; Seán I. O'Donoghue; Venkata P. Satagopam; Theodoros G. Soldatos; Evangelos Pafilis; Reinhard Schneider 002 (BMC Syst. Biol., 2008)

SuperTarget and Matador: resources for exploring drug-target relationships. - Stefan Günther; Michael Kuhn 004; Mathias Dunkel; Monica Campillos; Christian Senger; Evangelia Petsalaki; Jessica Ahmed; Eduardo Garcia Urdiales; Andreas Gewiess; Lars Juhl Jensen; Reinhard Schneider 002; Roman Skoblo; et al. (Nucleic Acids Res., 2008)

jClust: a clustering and visualization toolbox. - Georgios A. Pavlopoulos; Charalampos N. Moschopoulos; Sean D. Hooper; Reinhard Schneider 002; Sophia Kossida (Bioinform., 2009)

OnTheFly: a tool for automated document-based text annotation, data linking and network generation. - Georgios A. Pavlopoulos; Evangelos Pafilis; Michael Kuhn 004; Sean D. Hooper; Reinhard Schneider 002 (Bioinform., 2009)

GIBA: a clustering tool for detecting protein complexes. - Charalampos N. Moschopoulos; Georgios A. Pavlopoulos; Reinhard Schneider 002; Spiridon D. Likothanassis; Sophia Kossida (BMC Bioinform., 2009)

A reference guide for tree analysis and visualization. - Georgios A. Pavlopoulos; Theodoros G. Soldatos; Adriano Barbosa-Silva; Reinhard Schneider 002 (BioData Min., 2010)

GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. - Venkata P. Satagopam; Margarita C. Theodoropoulou; Christos K. Stampolakis; Georgios A. Pavlopoulos; Nikolaos Papandreou; Pantelis G. Bagos; Reinhard Schneider 002; Stavros J. Hamodrakas (Database J. Biol. Databases Curation, 2010)

LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. - Adriano Barbosa-Silva; Theodoros G. Soldatos; Ivan L. F. Magalhães; Georgios A. Pavlopoulos; Jean-Fred Fontaine; Miguel A. Andrade-Navarro; Reinhard Schneider 002; José Miguel Ortega (BMC Bioinform., 2010)

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

Live Coverage of Scientific Conferences Using Web Technologies. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

Reflect: A practical approach to web semantics. - Seán I. O'Donoghue; Heiko Horn; Evangelos Pafilis; Sven Haag; Michael Kuhn 004; Venkata P. Satagopam; Reinhard Schneider 002; Lars Juhl Jensen (J. Web Semant., 2010)

Using graph theory to analyze biological networks. - Georgios A. Pavlopoulos; Maria Secrier; Charalampos N. Moschopoulos; Theodoros G. Soldatos; Sophia Kossida; Jan Aerts; Reinhard Schneider 002; Pantelis G. Bagos (BioData Min., 2011)

A series of PDB related databases for everyday needs. - Robbie P. Joosten; Tim A. H. te Beek; Elmar Krieger; Maarten L. Hekkelman; Rob W. W. Hooft; Reinhard Schneider 002; Chris Sander; Gert Vriend (Nucleic Acids Res., 2011)

HPCS 2012 panels: Panel I: Energy efficient systems in next generation high performance data and compute centers. - Laurent Lefèvre; Vicente Martin; Miguel A. Ordonez; Johnatan E. Pecero; Jean-Marc Pierson; Jesús Carretero 001; Pascal Bouvry; David R. C. Hill; Jesús Labarta; Reinhard Schneider 002; James C. Sexton; Mads Nygård; et al. (HPCS, 2012)

Caipirini: using gene sets to rank literature. - Theodoros G. Soldatos; Seán I. O'Donoghue; Venkata P. Satagopam; Adriano Barbosa-Silva; Georgios A. Pavlopoulos; Ana Carolina Wanderley-Nogueira; Nina da Mota Soares-Cavalcanti; Reinhard Schneider 002 (BioData Min., 2012)

EnrichNet: network-based gene set enrichment analysis. - Enrico Glaab; Anaïs Baudot; Natalio Krasnogor; Reinhard Schneider 002; Alfonso Valencia (Bioinform., 2012)

PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data. - Enrico Glaab; Reinhard Schneider 002 (Bioinform., 2012)

ReLiance: a machine learning and literature-based prioritization of receptor - ligand pairings. - Ernesto Iacucci; Léon-Charles Tranchevent; Dusan Popovic; Georgios A. Pavlopoulos; Bart De Moor; Reinhard Schneider 002; Yves Moreau (Bioinform., 2012)

Paving the future: finding suitable ISMB venues. - Burkhard Rost; Terry Gaasterland; Thomas Lengauer; Michal Linial; Scott Markel; B. J. Morrison McKay; Reinhard Schneider 002; Paul Horton; Janet Kelso (Bioinform., 2012)

A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs. - Ernesto Iacucci; Léon-Charles Tranchevent; Dusan Popovic; Georgios A. Pavlopoulos; Bart De Moor; Reinhard Schneider 002; Yves Moreau (BMC Bioinform., 2012)

Arena3D: visualizing time-driven phenotypic differences in biological systems. - Maria Secrier; Georgios A. Pavlopoulos; Jan Aerts; Reinhard Schneider 002 (BMC Bioinform., 2012)

Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference. - Francisco Azuaje; Michaël Heymann; Anne-Marie Ternes; Anke Wienecke-Baldacchino; Daniel Struck; Danièle Moes; Reinhard Schneider 002 (J. Clin. Bioinform., 2012)

How Not to Be a Bioinformatician. - Manuel Corpas; Segun A. Fatumo; Reinhard Schneider 002 (Source Code Biol. Medicine, 2012)

OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. - Evangelos Pafilis; Georgios A. Pavlopoulos; Venkata P. Satagopam; Nikolas Papanikolaou; Heiko Horn; Christos Arvanitidis; Lars Juhl Jensen; Reinhard Schneider 002; Ioannis Iliopoulos (BIBE, 2013)

Unraveling genomic variation from next generation sequencing data. - Georgios A. Pavlopoulos; Anastasis Oulas; Ernesto Iacucci; Alejandro Sifrim; Yves Moreau; Reinhard Schneider 002; Jan Aerts; Ioannis Iliopoulos (BioData Min., 2013)

iAnn: an event sharing platform for the life sciences. - Rafael C. Jiménez; Juan P. Albar; Jong Bhak; Marie-Claude Blatter; Thomas Blicher; Michelle D. Brazas; Catherine Brooksbank; Aidan Budd; Javier De Las Rivas; Jacqueline Dreyer; Marc A. van Driel; Michael J. Dunn; et al. (Bioinform., 2013)

Visualizing time-related data in biology, a review. - Maria Secrier; Reinhard Schneider 002 (Briefings Bioinform., 2014)

COMPARTMENTS: unification and visualization of protein subcellular localization evidence. - Janos X. Binder; Sune Pletscher-Frankild; Kalliopi Tsafou; Christian Stolte; Seán I. O'Donoghue; Reinhard Schneider 002; Lars Juhl Jensen (Database J. Biol. Databases Curation, 2014)

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. - Nikolas Papanikolaou; Georgios A. Pavlopoulos; Evangelos Pafilis; Theodosios Theodosiou; Reinhard Schneider 002; Venkata P. Satagopam; Christos A. Ouzounis; Aristides G. Eliopoulos; Vasilis J. Promponas; Ioannis Iliopoulos (Bioinform., 2014)

PredictProtein - an open resource for online prediction of protein structural and functional features. - Guy Yachdav; Edda Kloppmann; László Kaján; Maximilian Hecht; Tatyana Goldberg; Tobias Hamp; Peter Hönigschmid; Andrea Schafferhans; Manfred Roos; Michael Bernhofer; Lothar Richter; Haim Ashkenazy; et al. (Nucleic Acids Res., 2014)

The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. - Norman E. Davey; Venkata P. Satagopam; Salvador Santiago-Mozos; Carlos Villacorta-Martin; Tanmay A. M. Bharat; Reinhard Schneider 002; John A. G. Briggs (PLoS Comput. Biol., 2014)

A Novel Multi-objectivisation Approach for Optimising the Protein Inverse Folding Problem. - Sune S. Nielsen; Grégoire Danoy; Wiktor Jurkowski; Juan Luis Jiménez Laredo; Reinhard Schneider 002; El-Ghazali Talbi; Pascal Bouvry (EvoApplications, 2015)

RepExplore: addressing technical replicate variance in proteomics and metabolomics data analysis. - Enrico Glaab; Reinhard Schneider 002 (Bioinform., 2015)

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. - Nikolas Papanikolaou; Georgios A. Pavlopoulos; Evangelos Pafilis; Theodosios Theodosiou; Reinhard Schneider 002; Venkata P. Satagopam; Christos A. Ouzounis; Aristides G. Eliopoulos; Vasilis J. Promponas; Ioannis Iliopoulos (Bioinform., 2015)

Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. - Venkata P. Satagopam; Wei Gu; Serge Eifes; Piotr Gawron; Marek Ostaszewski; Stephan Gebel; Adriano Barbosa-Silva; Rudi Balling; Reinhard Schneider 002 (Big Data, 2016)

SmartR: an open-source platform for interactive visual analytics for translational research data. - Sascha Herzinger; Wei Gu; Venkata P. Satagopam; Serge Eifes; Kavita Rege; Adriano Barbosa-Silva; Reinhard Schneider 002 (Bioinform., 2017)

ReconMap: an interactive visualization of human metabolism. - Alberto Noronha; Anna Dröfn Daníelsdóttir; Piotr Gawron; Freyr Jóhannsson; Soffía Jónsdóttir; Sindri Jarlsson; Jón Pétur Gunnarsson; Sigurður Brynjólfsson; Reinhard Schneider 002; Ines Thiele; Ronan M. T. Fleming (Bioinform., 2017)

ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software. - Laurent Heirendt; Sylvain Arreckx; Christophe Trefois; Yohan Yarosz; Maharshi Vyas; Venkata P. Satagopam; Reinhard Schneider 002; Ines Thiele; Ronan M. T. Fleming (CoRR, 2017)

MolArt: a molecular structure annotation and visualization tool. - David Hoksza; Piotr Gawron; Marek Ostaszewski; Reinhard Schneider 002 (Bioinform., 2018)

Clustering approaches for visual knowledge exploration in molecular interaction networks. - Marek Ostaszewski; Emmanuel Kieffer; Grégoire Danoy; Reinhard Schneider 002; Pascal Bouvry (BMC Bioinform., 2018)

Evolutionary Algorithms for the Inverse Protein Folding Problem. - Sune S. Nielsen; Grégoire Danoy; Wiktor Jurkowski; Roland Krause; Reinhard Schneider 002; El-Ghazali Talbi; Pascal Bouvry (Handbook of Heuristics, 2018)

Community-driven roadmap for integrated disease maps. - Marek Ostaszewski; Stephan Gebel; Inna Kuperstein; Alexander Mazein; Andrei Yu. Zinovyev; Ugur Dogrusoz; Jan Hasenauer; Ronan M. T. Fleming; Nicolas Le Novère; Piotr Gawron; Thomas S. Ligon; Anna Niarakis; et al. (Briefings Bioinform., 2019)

MINERVA API and plugins: opening molecular network analysis and visualization to the community. - David Hoksza; Piotr Gawron; Marek Ostaszewski; Ewa Smula; Reinhard Schneider 002 (Bioinform., 2019)

Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. - Wei Gu; Reha Yildirimman; Emmanuel Van der Stuyft; Denny Verbeeck; Sascha Herzinger; Venkata P. Satagopam; Adriano Barbosa-Silva; Reinhard Schneider 002; Bodo M. H. Lange; Hans Lehrach; Yike Guo; David Henderson; et al. (BMC Bioinform., 2019)

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. - Alberto Noronha; Jennifer Modamio; Yohan Jarosz; Elisabeth Guerard; Nicolas Sompairac; German A. Preciat Gonzalez; Anna Dröfn Daníelsdóttir; Max Krecke; Diane Merten; Hulda S. Haraldsdóttir; Almut Heinken; Laurent Heirendt; et al. (Nucleic Acids Res., 2019)

LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks. - Bruna Piereck; Marx Oliveira-Lima; Ana Maria Benko-Iseppon; Sarah Diehl; Reinhard Schneider 002; Ana Christina Brasileiro-Vidal; Adriano Barbosa-Silva (BMC Bioinform., 2020)

Closing the gap between formats for storing layout information in systems biology. - David Hoksza; Piotr Gawron; Marek Ostaszewski; Jan Hasenauer; Reinhard Schneider 002 (Briefings Bioinform., 2021)

Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. - Alexander Mazein; Adrien Rougny; Jonathan R. Karr; Julio Saez-Rodriguez; Marek Ostaszewski; Reinhard Schneider 002 (Briefings Bioinform., 2021)

PredictProtein - Predicting Protein Structure and Function for 29 Years. - Michael Bernhofer; Christian Dallago; Timothy Karl; Venkata P. Satagopam; Michael Heinzinger; Maria Littmann; Tobias Olenyi; Jiajun Qiu; Konstantin Schütze; Guy Yachdav; Haim Ashkenazy; Nir Ben-Tal; et al. (Nucleic Acids Res., 2021)

Arena3Dweb: interactive 3D visualization of multilayered networks. - Evangelos Karatzas; Fotis A. Baltoumas; Nikolaos A. Panayiotou; Reinhard Schneider 002; Georgios A. Pavlopoulos (Nucleic Acids Res., 2021)

Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. - Carlos Vega; Miroslav Kratochvíl; Venkata P. Satagopam; Reinhard Schneider 002 (IWBBIO (2), 2022)

COBREXA.jl: constraint-based reconstruction and exascale analysis. - Miroslav Kratochvíl; Laurent Heirendt; St. Elmo Wilken; Taneli Pusa; Sylvain Arreckx; Alberto Noronha; Marvin van Aalst; Venkata P. Satagopam; Oliver Ebenhöh; Reinhard Schneider 002; Christophe Trefois; Wei Gu (Bioinform., 2022)

RDM Services at the Luxembourg National Data Service. - Wei Gu; Christophe Trefois; Pinar Alper; Danielle Welter; Yohan Jarosz; Jacek Lebioda; Linda Ebermann; Regina Becker; Venkata P. Satagopam; Reinhard Schneider 002; Bert Verdonck (CoRDI, 2023)

Visualization of automatically combined disease maps and pathway diagrams for rare diseases. - Piotr Gawron; David Hoksza; Janet Piñero; María Peña-Chilet; Marina Esteban-Medina; Jose Luis Fernandez-Rueda; Vincenza Colonna; Ewa Smula; Laurent Heirendt; François Ancien; Valentin Grouès; Venkata P. Satagopam; et al. (Frontiers Bioinform., 2023)

Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses. - Ahmed Abdelmonem Hemedan; Reinhard Schneider 002; Marek Ostaszewski (Frontiers Bioinform., 2023)

A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. - Alexander Mazein; Marcio Luis Acencio; Irina Balaur; Adrien Rougny; Danielle Welter; Anna Niarakis; Diana Ramirez Ardila; Ugur Dogrusoz; Piotr Gawron; Venkata P. Satagopam; Wei Gu; Andreas Kremer; et al. (Frontiers Bioinform., 2023)

Analysis: Flawed Datasets of Monkeypox Skin Images. - Carlos Vega; Reinhard Schneider 002; Venkata P. Satagopam (J. Medical Syst., 2023)

Graph databases in systems biology: a systematic review. - Ilya Mazein; Adrien Rougny; Alexander Mazein; Ron Henkel; Lea Gütebier; Lea Michaelis; Marek Ostaszewski; Reinhard Schneider 002; Venkata P. Satagopam; Lars Juhl Jensen; Dagmar Waltemath; Judith A. H. Wodke; et al. (Briefings Bioinform., 2024)

Integrating digital gait data with metabolomics and clinical data to predict outcomes in Parkinson's disease. - Cyril Brzenczek; Quentin Klopfenstein; Tom Hähnel; Holger Fröhlich; Enrico Glaab; Geeta Acharya; Gloria Aguayo; Myriam Alexandre; Muhammad Ali; Wim Ammerlann; Giuseppe Arena; Michele Bassis; et al. (npj Digit. Medicine, 2024)

BioKC: a collaborative platform for curation and annotation of molecular interactions. - Carlos Vega; Marek Ostaszewski; Valentin Grouès; Reinhard Schneider 002; Venkata P. Satagopam (Database J. Biol. Databases Curation, 2024)

Multi-cohort machine learning identifies predictors of cognitive impairment in Parkinson's disease. - Rebecca Ting Jiin Loo; Lukas Pavelka; Graziella Mangone; Fouad Khoury; Marie Vidailhet; Jean-Christophe Corvol; Enrico Glaab; Geeta Acharya; Gloria Aguayo; Myriam Alexandre; Muhammad Ali; Wim Ammerlann; et al. (npj Digit. Medicine, 2025)