TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis. - André Fischer; Nils Enkler; Gerd Neudert; Marco Bocola; Reinhard Sterner; Rainer Merkl (BMC Bioinform., 2009)

Rosetta: MSF: a modular framework for multi-state computational protein design. - Patrick Löffler; Samuel Schmitz; Enrico Hupfeld; Reinhard Sterner; Rainer Merkl (PLoS Comput. Biol., 2017)