Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb. - Remo Monti; Iros Barozzi; Marco Osterwalder; Elizabeth Lee; Momoe Kato; Tyler H. Garvin; Ingrid Plajzer-Frick; Catherine S. Pickle; Jennifer A. Akiyama; Veena Afzal; Niko Beerenwinkel; Diane E. Dickel; et al. (PLoS Comput. Biol., 2017)

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics. - Aiham Taleb; Matthias Kirchler; Remo Monti; Christoph Lippert (CVPR, 2022)

HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes. - Sophie Wharrie; Zhiyu Yang; Vishnu Raj; Remo Monti; Rahul Gupta; Ying Wang 074; Alicia Martin; Luke J. O'Connor; Samuel Kaski; Pekka Marttinen; Pier Francesco Palamara; Christoph Lippert; et al. (Bioinform., 2023)

Metadata-guided feature disentanglement for functional genomics. - Alexander Rakowski; Remo Monti; Viktoriia Huryn; Marta Lemanczyk; Uwe Ohler; Christoph Lippert (Bioinform., 2024)