oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language. - Remo Sanges; Francesca Cordero; Raffaele A. Calogero (Bioinform., 2007)

The UniTrap resource: tools for the biologist enabling optimized use of gene trap clones. - Guglielmo Roma; Marco Sardiello; Gilda Cobellis; Pedro Cruz; Giampiero Lago; Remo Sanges; Elia Stupka (Nucleic Acids Res., 2008)

Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements. - Swaraj Basu; Ferenc Müller; Remo Sanges (BMC Bioinform., 2013)

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs. - Francesco Musacchia; Swaraj Basu; Giuseppe Petrosino; Marco Salvemini; Remo Sanges (Bioinform., 2015)

ClusterScan: simple and generalistic identification of genomic clusters. - Massimiliano Volpe; Marco Miralto; Stefano Gustincich; Remo Sanges (Bioinform., 2018)

Exploratory analysis of transposable elements expression in the C. elegans early embryo. - Federico Ansaloni; Margherita Scarpato; Elia Di Schiavi; Stefano Gustincich; Remo Sanges (BMC Bioinform., 2019)

Impact of polymorphic transposable elements on transcription in lymphoblastoid cell lines from public data. - Giovanni Spirito; Damiano Mangoni; Remo Sanges; Stefano Gustincich (BMC Bioinform., 2019)

TEspeX: consensus-specific quantification of transposable element expression preventing biases from exonized fragments. - Federico Ansaloni; Nicolò Gualandi; Mauro Esposito; Stefano Gustincich; Remo Sanges (Bioinform., 2022)