Boosting Binding Sites Prediction Using Gene's Positions. - Mohamed Elati; Rim Fekih; Rémy Nicolle; Ivan Junier; Joan Hérisson; François Képès (WABI, 2011)

Network Transformation of Gene Expression for Feature Extraction. - Rémy Nicolle; Mohamed Elati; François Radvanyi (ICMLA (1), 2012)

Hybrid method inference for the construction of cooperative regulatory network in human. - I. Chebil; Rémy Nicolle; G. Santini; Céline Rouveirol; Mohamed Elati (BIBM, 2013)

Multi-Objective Optimization for Relevant Sub-graph Extraction. - Mohamed Elati; Cuong To; Rémy Nicolle (LION, 2013)

Pepper: cytoscape app for protein complex expansion using protein-protein interaction networks. - Charles Winterhalter; Rémy Nicolle; A. Louis; Cuong To; François Radvanyi; Mohamed Elati (Bioinform., 2014)

CoRegNet: reconstruction and integrated analysis of co-regulatory networks. - Rémy Nicolle; François Radvanyi; Mohamed Elati (Bioinform., 2015)

DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification. - Clémentine Decamps; Alexis Arnaud; Florent Petitprez; Mira Ayadi; Aurélia Baurès; Lucile Armenoult; Sergio Escalera; Isabelle Guyon; Rémy Nicolle; Richard Tomasini; Aurélien de Reyniès; Jérôme Cros; et al. (BMC Bioinform., 2021)