Learning from Data-Rich Problems: A Case Study on Genetic Variant Calling. - Ren Yi; Pi-Chuan Chang; Gunjan Baid; Andrew Carroll (CoRR, 2019)

The Triple Lattice PETs. - Ren Yi (Exp. Math., 2019)

Methods to Improve Knowledge Transfer Efficiency for Data-limited Problems in Genomics. - Ren Yi (2021)

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0. - Claudia Skok Gibbs; Christopher A. Jackson; Giuseppe-Antonio Saldi; Andreas Tjärnberg; Aashna Shah; Aaron Watters; Nicholas De Veaux; Konstantine Tchourine; Ren Yi; Tymor Hamamsy; Dayanne M. Castro; Nicholas Carriero; et al. (Bioinform., 2022)

NetTIME: a multitask and base-pair resolution framework for improved transcription factor binding site prediction. - Ren Yi; Kyunghyun Cho; Richard Bonneau (Bioinform., 2022)

AirGapAgent: Protecting Privacy-Conscious Conversational Agents. - Eugene Bagdasarian; Ren Yi; Sahra Ghalebikesabi; Peter Kairouz; Marco Gruteser; Sewoong Oh; Borja Balle; Daniel Ramage (CCS, 2024)

Escape Attacks on Transwarp Data Cloud Container. - Wanggen Liu; Ren Yi; Yisheng Gu; Zhaowu Chu; Chenyun Liu; Hongshan Yang (SmartCloud, 2024)

Air Gap: Protecting Privacy-Conscious Conversational Agents. - Eugene Bagdasaryan; Ren Yi; Sahra Ghalebikesabi; Peter Kairouz; Marco Gruteser; Sewoong Oh; Borja Balle; Daniel Ramage (CoRR, 2024)

Operationalizing Contextual Integrity in Privacy-Conscious Assistants. - Sahra Ghalebikesabi; Eugene Bagdasaryan; Ren Yi; Itay Yona; Ilia Shumailov; Aneesh Pappu; Chongyang Shi 003; Laura Weidinger; Robert Stanforth; Leonard Berrada; Pushmeet Kohli; Po-Sen Huang; et al. (CoRR, 2024)

CI-Bench: Benchmarking Contextual Integrity of AI Assistants on Synthetic Data. - Zhao Cheng; Diane Wan; Matthew Abueg; Sahra Ghalebikesabi; Ren Yi; Eugene Bagdasarian; Borja Balle; Stefan Mellem; Shawn O'Banion (CoRR, 2024)

Mayfly: Private Aggregate Insights from Ephemeral Streams of On-Device User Data. - Christopher Bian; Albert Cheu; Stanislav Chiknavaryan; Zoe Gong; Marco Gruteser; Oliver Guinan; Yannis Guzman; Peter Kairouz; Artem Lagzdin; Ryan McKenna; Grace Ni; Edo Roth; et al. (CoRR, 2024)

Privacy Awareness for Information-Sharing Assistants: A Case-study on Form-filling with Contextual Integrity. - Sahra Ghalebikesabi; Eugene Bagdasarian; Ren Yi; Itay Yona; Ilia Shumailov; Aneesh Pappu; Chongyang Shi 003; Laura Weidinger; Robert Stanforth; Leonard Berrada; Pushmeet Kohli; Po-Sen Huang; et al. (Trans. Mach. Learn. Res., 2025)

Privacy Reasoning in Ambiguous Contexts. - Ren Yi; Octavian Suciu; Adrià Gascón; Sarah Meiklejohn; Eugene Bagdasarian; Marco Gruteser (CoRR, 2025)