Loss of Genetic Redundancy in Reductive Genome Evolution. - André G. Mendonça; Renato J. Alves; José B. Pereira-Leal (PLoS Comput. Biol., 2011)

inTB - a data integration platform for molecular and clinical epidemiological analysis of tuberculosis. - Patricia Soares; Renato J. Alves; Ana B. Abecasis; Carlos Penha Gonçalves; M. Gabriela Gomes; José B. Pereira-Leal (BMC Bioinform., 2013)

Bioinformatics Projects Supporting Life-Sciences Learning in High Schools. - Isabel Marques; Paulo Almeida; Renato J. Alves; Maria João Dias; Ana Godinho; José B. Pereira-Leal (PLoS Comput. Biol., 2014)

datacarpentry/r-socialsci: Data Carpentry: Data Analysis and Visualization in R for Social Scientists, February 2023. - Juan Fung; Allison Shay Theobold; Kelsey Gonzalez; Angela Li; Eirini Zormpa; Maneesha Sane; Jesse Sadler; Brynn Elliott; bkmgit; bbartholdy; aranganath24; Erin Alison Becker; et al. (Zenodo, 2023)