GAVGA: A Genetic Algorithm for Viral Genome Assembly. - Renato R. M. Oliveira; Filipe Damasceno; Ronald Souza; Reginaldo Santos 001; Manoel Lima; Regiane Kawasaki; Claudomiro Sales (EPIA, 2017)

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly. - Renato R. M. Oliveira; Gisele Lopes Nunes; Talvâne Glauber Lopes de Lima; Guilherme Oliveira; Ronnie Alves (BMC Bioinform., 2018)

PIMBA: A PIpeline for MetaBarcoding Analysis. - Renato R. M. Oliveira; Raíssa Silva; Gisele Lopes Nunes; Guilherme Oliveira (BSB, 2021)

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. - Matthew R. Dillon; Evan Bolyen; Anja Adamov; Aeriel Belk; Emily Borsom; Zachary Burcham; Justine W. Debelius; Heather Deel; Alex Emmons; Mehrbod Estaki; Chloe Herman; Christopher R. Keefe; et al. (PLoS Comput. Biol., 2021)

SPLACE: A tool to automatically SPLit, Align, and ConcatenatE genes for phylogenomic inference of several organisms. - Renato R. M. Oliveira; Santelmo Vasconcelos; Guilherme Oliveira (Frontiers Bioinform., 2022)