Analysis and Optimization of C3 Photosynthetic Carbon Metabolism. - Giovanni Stracquadanio; Renato Umeton; Alessio Papini; Pietro Liò; Giuseppe Nicosia (BIBE, 2010)

Design of robust metabolic pathways. - Renato Umeton; Giovanni Stracquadanio; Anilkumar Sorathiya; Pietro Liò; Alessio Papini; Giuseppe Nicosia (DAC, 2011)

Large Scale Agent-Based Modeling of the Humoral and Cellular Immune Response. - Giovanni Stracquadanio; Renato Umeton; Jole Costanza; Viviana Annibali; Rosella Mechelli; Mario Pavone; Luca Zammataro; Giuseppe Nicosia (ICARIS, 2011)

Multiscale Mathematical Modeling to Support Drug Development. - David Nordsletten; Beracah Yankama; Renato Umeton; V. A. Shiva Ayyadurai; C. Forbes Dewey Jr. (IEEE Trans. Biomed. Eng., 2011)

OREMPdb: a semantic dictionary of computational pathway models. - Renato Umeton; Giuseppe Nicosia; C. Forbes Dewey Jr. (BMC Bioinform., 2012)

Operationalizing Artificial Intelligence: Lessons Learned at Dana-Farber Cancer Institute. - John Methot; Renato Umeton; Gregory Antell (AMIA, 2020)

Automated machine learning: Review of the state-of-the-art and opportunities for healthcare. - Jonathan Waring; Charlotta Lindvall; Renato Umeton (Artif. Intell. Medicine, 2020)

A Review of Medical Federated Learning: Applications in Oncology and Cancer Research. - Alexander Chowdhury; Hasan Kassem; Nicolas Padoy; Renato Umeton; Alexandros Karargyris (BrainLes@MICCAI (1), 2021)

MedPerf: Open Benchmarking Platform for Medical Artificial Intelligence using Federated Evaluation. - Alexandros Karargyris; Renato Umeton; Micah J. Sheller; Alejandro Aristizabal; Johnu George; Srini Bala; Daniel J. Beutel; Victor Bittorf; Akshay Chaudhari; Alexander Chowdhury; Cody Coleman; Bala Desinghu; et al. (CoRR, 2021)

Applying Self-Supervised Learning to Medicine: Review of the State of the Art and Medical Implementations. - Alexander Chowdhury; Jacob Rosenthal; Jonathan Waring; Renato Umeton (Informatics, 2021)

Whole Slide Image to DICOM Conversion as Event-Driven Cloud Infrastructure. - David Brundage; Jacob Rosenthal; Ryan Carelli; Sophie Rand; Renato Umeton; Massimo Loda; Luigi Marchionni (CoRR, 2022)

Federated benchmarking of medical artificial intelligence with MedPerf. - Alexandros Karargyris; Renato Umeton; Micah J. Sheller; Alejandro Aristizabal; Johnu George; Anna Wuest; Sarthak Pati; Hasan Kassem; Maximilian Zenk; Ujjwal Baid; Prakash Narayana Moorthy; Alexander Chowdhury; et al. (Nat. Mac. Intell., 2023)

Multiplex Imaging Analysis in Pathology: a Comprehensive Review on Analytical Approaches and Digital Toolkits. - Mohamed Omar; Giuseppe Nicoló Fanelli; Fabio Socciarelli; Varun Ullanat; Sreekar Reddy Puchala; James Wen; Alexander Chowdhury; Itzel Valencia; Cristian Scatena; Luigi Marchionni; Renato Umeton; Massimo Loda (CoRR, 2024)

Red Teaming for Generative AI, Report on a Copyright-Focused Exercise Completed in an Academic Medical Center. - James Wen; Sahil S. Nalawade; Zhiwei Liang; Catherine Bielick; Marisa Ferrara Boston; Alexander Chowdhury; Adele Collin; Luigi De Angelis; Jacob Ellen; Heather Frase; Rodrigo R. Gameiro; Juan Manuel Gutierrez; et al. (CoRR, 2025)

Conversational LLMs Simplify Secure Clinical Data Access, Understanding, and Analysis. - Rafi Al Attrach; Pedro Moreira; Rajna Fani; Renato Umeton; Leo Anthony Celi (CoRR, 2025)