Fuzzy logic-based gene regulatory network. - Habtom W. Ressom; Dali Wang; Rency S. Varghese; Robert Reynolds 002 (FUZZ-IEEE, 2003)

A fuzzy confidence value for DNA bases. - Rency Susan Varghese; Mohamad T. Musavi; Habtom W. Ressom (FUZZ-IEEE, 2004)

Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. - Habtom W. Ressom; Rency S. Varghese; Eduard Orvisky; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (CIBCB, 2005)

Particle swarm optimization for analysis of mass spectral serum profiles. - Habtom W. Ressom; Rency S. Varghese; Daniel Saha; Eduard Orvisky; Lenka Goldman; Emanuel F. Petricoin; Thomas P. Conrads; Timothy D. Veenstra; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (GECCO, 2005)

Analysis of mass spectral serum profiles for biomarker selection. - Habtom W. Ressom; Rency S. Varghese; Mohamed Abdel-Hamid; Sohair Abdel-Latif Eissa; Daniel Saha; Lenka Goldman; Emanuel F. Petricoin; Thomas P. Conrads; Timothy D. Veenstra; Christopher A. Loffredo; Radoslav Goldman (Bioinform., 2005)

Applications of fuzzy logic in genomics. - Habtom W. Ressom; Padma Natarajan; Rency S. Varghese; Mohamad T. Musavi (Fuzzy Sets Syst., 2005)

Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. - Habtom W. Ressom; Rency S. Varghese; Eduard Orvisky; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (CIBCB, 2006)

Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra. - Habtom W. Ressom; Rency S. Varghese; Eduard Orvisky; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (EMBC, 2006)

Peak selection from MALDI-TOF mass spectra using ant colony optimization. - Habtom W. Ressom; Rency S. Varghese; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (Bioinform., 2007)

Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers. - Habtom W. Ressom; Rency S. Varghese; Lenka Goldman; Christopher A. Loffredo; Mohamed Abdel-Hamid; Zuzana Kyselova; Yehia Mechref; Milos V. Novotny; Radoslav Goldman (Pacific Symposium on Biocomputing, 2008)

Using a spike-in experiment to evaluate analysis of LC-MS data. - Leepika Tuli; Tsung-Heng Tsai; Rency S. Varghese; Amrita K. Cheema; Habtom W. Ressom (BIBM Workshops, 2010)

Meta-analysis of LC-MS based metabolomic experiments. - Rency S. Varghese; Bin Zhou; Habtom W. Ressom (BIBM Workshops, 2011)

Network-based analysis of reverse phase protein array data. - Rency S. Varghese; Yiming Zuo 002; Yi Zhao; Yong-Wei Zhang; Sandra A. Jablonski; Mariaelena Pierobon; Emanuel F. Petricoin; Habtom W. Ressom; Louis M. Weiner (BIBM, 2016)

Multi-omic approaches for characterization of hepatocellular carcinoma. - Habtom W. Ressom; Cristina Di Poto; Alessia Ferrarini; Yunli Hu; Mohammad R. Nezami Ranjbar; Ehwang Song; Rency S. Varghese; Minkun Wang; Shiyue Zhou; Rui Zhu; Yiming Zuo 002; Mahlet G. Tadesse; et al. (EMBC, 2016)

INDEED: R package for network based differential expression analysis. - Zhenzhi Li; Yiming Zuo 002; Chaohui Xu; Rency S. Varghese; Habtom W. Ressom (BIBM, 2018)

Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients. - Megan E. Barefoot; Yifan Chen; Rency S. Varghese; Yuan Zhou; Habtom W. Ressom (BIBM, 2019)

Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma. - Megan E. Barefoot; Rency S. Varghese; Yuan Zhou; Cristina Di Poto; Alessia Ferrarini; Habtom W. Ressom (EMBC, 2019)

Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma. - Yifan Chen; Megan E. Barefoot; Rency S. Varghese; Kuijun Wang; Cristina Di Poto; Habtom W. Ressom (EMBC, 2020)

Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma. - Rency S. Varghese; Yuan Zhou; Yifan Chen; Megan E. Barefoot; Mahlet G. Tadesse; Habtom W. Ressom (EMBC, 2020)

Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment. - Sidharth S. Jain; Megan E. Barefoot; Rency S. Varghese; Habtom W. Ressom (BIBM, 2022)

A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma. - Marie Denis; Rency S. Varghese; Megan E. Barefoot; Mahlet G. Tadesse; Habtom W. Ressom (EMBC, 2022)

Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma. - Yichen Guo; Marie Denis; Rency S. Varghese; Sidharth S. Jain; Mahlet G. Tadesse; Habtom W. Ressom (BIBM, 2023)

Deep Learning Based Metabolite Annotation. - Hoi Yan Katharine Chau; Hongyu Ao; Xinran Zhang; Shijinqiu Gao; Rency S. Varghese; Habtom W. Ressom (EMBC, 2023)