Selective adsorption of alkyl thiols on gold in different geometries. - Philipp Schapotschnikow; René Pool; Thijs J. H. Vlugt (Comput. Phys. Commun., 2007)

Charge Group Partitioning in Biomolecular Simulation. - Stefan Canzar; Mohammed El-Kebir; René Pool; Khaled M. Elbassioni; Alpeshkumar K. Malde; Alan E. Mark; Daan P. Geerke; Leen Stougie; Gunnar W. Klau (RECOMB, 2012)

Enabling grand-canonical Monte Carlo: Extending the flexibility of GROMACS through the GromPy python interface module. - René Pool; Jaap Heringa; Martin Hoefling; Roland Schulz; Jeremy C. Smith; K. Anton Feenstra (J. Comput. Chem., 2012)

Charge Group Partitioning in Biomolecular Simulation. - Stefan Canzar; Mohammed El-Kebir; René Pool; Khaled M. Elbassioni; Alan E. Mark; Daan P. Geerke; Leen Stougie; Gunnar W. Klau (J. Comput. Biol., 2013)

Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins. - Ali May; René Pool; Erik van Dijk; Jochem Bijlard; Sanne Abeln; Jaap Heringa; K. Anton Feenstra (Bioinform., 2014)