Journaled string tree - a scalable data structure for analyzing thousands of similar genomes on your laptop. - René Rahn; David Weese; Knut Reinert (Bioinform., 2014)

Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading. - René Rahn; Stefan Budach; Pascal Costanza; Marcel Ehrhardt; Jonny Hancox; Knut Reinert (Bioinform., 2018)

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. - Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn A. Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey; Uwe Scholz; Malvika Sharan; et al. (F1000Research, 2019)

Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments. - Mitra Darvish; Enrico Seiler; Svenja Mehringer; René Rahn; Knut Reinert (Bioinform., 2022)

Performance-Driven Algorithm Engineering: Optimising Pairwise Sequence Alignment and Pattern Matching Algorithms in the Era of Pangenomic Sequence Analysis. - René Rahn (2023)

Linear: a framework to enable existing software to resolve structural variants in long reads with flexible and efficient alignment-free statistical models. - Chenxu Pan; René Rahn; David Heller; Knut Reinert (Briefings Bioinform., 2023)