QPCR: Application for real-time PCR data management and analysis. - Stephan Pabinger; Gerhard G. Thallinger; René Snajder; Heiko Eichhorn; Robert Rader; Zlatko Trajanoski (BMC Bioinform., 2009)

GPViz: dynamic visualization of genomic regions and variants affecting protein domains. - René Snajder; Zlatko Trajanoski; Hubert Hackl (Bioinform., 2013)

A survey of tools for variant analysis of next-generation genome sequencing data. - Stephan Pabinger; Andreas Dander; Maria Fischer; René Snajder; Michael Sperk; Mirjana Efremova; Birgit Krabichler; Michael R. Speicher; Johannes Zschocke; Zlatko Trajanoski (Briefings Bioinform., 2014)

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data. - Stephan Pabinger; René Snajder; Timo Hardiman; Michaela Willi; Andreas Dander; Zlatko Trajanoski (Database J. Biol. Databases Curation, 2014)

Methods for Epigenetic Analyses from Long-Read Sequencing Data - René Snajder (2023)