Rekonstruktion von 4D-CT-Daten aus räumlich-zeitlichen CT-Segmentfolgen zur Analyse atmungsbedingter Organbewegungen. - René Werner; Jan Ehrhardt; Thorsten Frenzel; Dennis Säring; Daniel Low; Heinz Handels (Bildverarbeitung für die Medizin, 2006)

Generation of 4D CT Image Data and Analysis of Lung Tumour Mobility during the Breathing Cycle. - Heinz Handels; René Werner; Thorsten Frenzel; Dennis Säring; Wei Lu 025; Daniel Low; Jan Ehrhardt (MIE, 2006)

Reconstruction of 4D-CT data sets acquired during free breathing for the analysis of respiratory motion. - Jan Ehrhardt; René Werner; Thorsten Frenzel; Dennis Säring; Wei Lu 025; Daniel Low; Heinz Handels (Image Processing, 2006)

Analysis of free breathing motion using artifact reduced 4D CT image data. - Jan Ehrhardt; René Werner; Thorsten Frenzel; Wei Lu 025; Daniel Low; Heinz Handels (Image Processing, 2007)

4D medical image computing and visualization of lung tumor mobility in spatio-temporal CT image data. - Heinz Handels; René Werner; Rainer Schmidt 004; Thorsten Frenzel; Wei Lu 025; Daniel Low; Jan Ehrhardt (Int. J. Medical Informatics, 2007)

Finite-Element-Modellierung von respiratorischen Lungenbewegungen als elastizitätstheoretisches Kontaktproblem zur Bewegungsschätzung in 4D-CT-Daten. - René Werner; Jan Ehrhardt; Rainer Schmidt 004; Heinz Handels (Bildverarbeitung für die Medizin, 2008)

Generation of a Mean Motion Model of the Lung Using 4D-CT Image Data. - Jan Ehrhardt; René Werner; Alexander Schmidt-Richberg; Benny Schulz; Heinz Handels (VCBM, 2008)

Integrierte Segmentierung und Trajektorienberechnung mittels diffeomorpher Registrierung in räumlich-zeitlichen CT-Bildfolgen. - Alexander Schmidt-Richberg; Jan Ehrhardt; René Werner; Heinz Handels (Bildverarbeitung für die Medizin, 2009)

Estimation of Inner Lung Motion Fields by Non-linear Registration. - René Werner; Jan Ehrhardt; Alexander Schmidt-Richberg; Florian Cremers; Heinz Handels (Bildverarbeitung für die Medizin, 2009)

Slipping Objects in Image Registration: Improved Motion Field Estimation with Direction-Dependent Regularization. - Alexander Schmidt-Richberg; Jan Ehrhardt; René Werner; Heinz Handels (MICCAI (1), 2009)

Validation and comparison of a biophysical modeling approach and non-linear registration for estimation of lung motion fields in thoracic 4D CT data. - René Werner; Jan Ehrhardt; Alexander Schmidt-Richberg; Heinz Handels (Image Processing, 2009)

Automatische Landmarkendetektion und -übertragung zur Evaluation der Registrierung von thorakalen CT-Daten. - René Werner; Jan-Christoph Wolf; Jan Ehrhardt; Alexander Schmidt-Richberg; Heinz Handels (Bildverarbeitung für die Medizin, 2010)

A statistical shape and motion model for the prediction of respiratory lung motion. - Jan Ehrhardt; René Werner; Alexander Schmidt-Richberg; Heinz Handels (Image Processing, 2010)

Direction-dependent regularization for improved estimation of liver and lung motion in 4D image data. - Alexander Schmidt-Richberg; Jan Ehrhardt; René Werner; Heinz Handels (Image Processing, 2010)

Estimation of motion fields by non-linear registration for local lung motion analysis in 4D CT image data. - René Werner; Jan Ehrhardt; Alexander Schmidt-Richberg; Anabell Heiß; Heinz Handels (Int. J. Comput. Assist. Radiol. Surg., 2010)

Optimierung nicht-linearer Registrierung durch automatisch detektierte Landmarken. - Jan-Christoph Wolf; Alexander Schmidt-Richberg; René Werner; Jan Ehrhardt; Heinz Handels (Bildverarbeitung für die Medizin, 2011)

Landmark-driven parameter optimization for non-linear image registration. - Alexander Schmidt-Richberg; René Werner; Jan Ehrhardt; Jan-Christoph Wolf; Heinz Handels (Image Processing, 2011)

Statistical Modeling of 4D Respiratory Lung Motion Using Diffeomorphic Image Registration. - Jan Ehrhardt; René Werner; Alexander Schmidt-Richberg; Heinz Handels (IEEE Trans. Medical Imaging, 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding 003; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

Evaluation of Algorithms for Lung Fissure Segmentation in CT Images. - Alexander Schmidt-Richberg; Jan Ehrhardt; Matthias Wilms; René Werner; Heinz Handels (Bildverarbeitung für die Medizin, 2012)

Evaluation von Differentialoperatoren zur Detektion anatomischer Landmarken in thorakalen und abdominalen tomographischen Bilddaten. - Christine Duscha; René Werner; Alexander Schmidt-Richberg; Heinz Handels (GI-Jahrestagung, 2012)

Automatische Detektion von Aneurysmen in 3D Time-of-Flight Magnetresonanzangiographie Datensätzen. - Santiago Suniaga; René Werner; Andre Kemmling; Michael Groth; Jens Fiehler; Nils Daniel Forkert (GI-Jahrestagung, 2012)

A Diffeomorphic Framework for Surrogate-based Motion Estimation in Radiation Therapy: Concept and First Evaluation. - René Werner; Jan Ehrhardt; Alexander Schmidt-Richberg; Matthias Wilms; Maximilian Blendowski; Heinz Handels (GI-Jahrestagung, 2012)

Lung Registration with Improved Fissure Alignment by Integration of Pulmonary Lobe Segmentation. - Alexander Schmidt-Richberg; Jan Ehrhardt; René Werner; Heinz Handels (MICCAI (2), 2012)

Computer-Aided Detection of Aneurysms in 3D Time-of-Flight MRA Datasets. - Santiago Suniaga; René Werner; Andre Kemmling; Michael Groth; Jens Fiehler; Nils Daniel Forkert (MLMI, 2012)

Model-based risk assessment for motion effects in 3D radiotherapy of lung tumors. - René Werner; Jan Ehrhardt; Alexander Schmidt-Richberg; Heinz Handels (Image-Guided Procedures, 2012)

Pulmonary lobe segmentation with level sets. - Alexander Schmidt-Richberg; Jan Ehrhardt; Matthias Wilms; René Werner; Heinz Handels (Image Processing, 2012)

Fast Explicit Diffusion for Registration with Direction-Dependent Regularization. - Alexander Schmidt-Richberg; Jan Ehrhardt; René Werner; Heinz Handels (WBIR, 2012)

Estimation of slipping organ motion by registration with direction-dependent regularization. - Alexander Schmidt-Richberg; René Werner; Heinz Handels; Jan Ehrhardt (Medical Image Anal., 2012)

Bewegungsfeldschätzung und Dosisakkumulation anhand von 4D-Bilddaten für die Strahlentherapie atmungsbewegter Tumoren. - René Werner (2012)

Simulation und Evaluation tiefenbildgebender Verfahren zur Prädiktion atmungsbedingter Organ- und Tumorbewegungen. - Maximilian Blendowski; Matthias Wilms; René Werner; Heinz Handels (Bildverarbeitung für die Medizin, 2013)

4D-MRT-basierte Simulation der Lungenbewegung in statischen CT-Daten. - Mirko Marx; Jan Ehrhardt; René Werner; Heinz-Peter Schlemmer; Heinz Handels (Bildverarbeitung für die Medizin, 2013)

Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT. - Hamidreza Mirzaei; Lisa Tang; René Werner; Ghassan Hamarneh (MLMI, 2013)

Assessing accuracy of non-linear registration in 4D image data using automatically detected landmark correspondences. - René Werner; Christine Duscha; Alexander Schmidt-Richberg; Jan Ehrhardt; Heinz Handels (Image Processing, 2013)

Surrogate-based diffeomorphic motion estimation for radiation therapy: comparison of multivariate regression approaches. - Matthias Wilms; René Werner; Jan Ehrhardt; Alexander Schmidt-Richberg; Maximilian Blendowski; Heinz Handels (Image Processing, 2013)

High Accuracy Optical Flow for 3D Medical Image Registration Using the Census Cost Function. - Simon Hermann; René Werner (PSIVT, 2013)

TV-L1-Based 3D Medical Image Registration with the Census Cost Function. - Simon Hermann; René Werner (PSIVT, 2013)

Kombination von Atemsignalen zur Optimierung der Prädiktion komplexer atmungsbedingter Organ- und Tumorbewegungen. - Jonas Ortmüller; Matthias Wilms; René Werner; Heinz Handels (Bildverarbeitung für die Medizin, 2014)

Statistical analysis of surrogate signals to incorporate respiratory motion variability into radiotherapy treatment planning. - Matthias Wilms; Jan Ehrhardt; René Werner; Mirko Marx; Heinz Handels (Image-Guided Procedures, 2014)

Simulation of spatiotemporal CT data sets using a 4D MRI-based lung motion model. - Mirko Marx; Jan Ehrhardt; René Werner; Heinz-Peter Schlemmer; Heinz Handels (Int. J. Comput. Assist. Radiol. Surg., 2014)

Variational Registration. - Jan Ehrhardt; Alexander Schmidt-Richberg; René Werner; Heinz Handels (Bildverarbeitung für die Medizin, 2015)

A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics. - Daniel Schetelig; Insa M. A. Wolf; Björn-Philipp Diercks; Ralf Fliegert; Andreas H. Guse; Alexander Schlaefer; René Werner (Bildverarbeitung für die Medizin, 2015)

Reference geometry-based detection of (4D-)CT motion artifacts: a feasibility study. - René Werner; Tobias Gauer (Image Processing, 2015)

Geometrieplanung und Bildregistrierung mittels bimodaler Fiducial-Marker für Magnetic Particle Imaging. - Franziska Werner; Caroline Jung; Martin Hofmann 016; Johannes Salamon; René Werner; Dennis Säring; Michael G. Kaul; Kolja Them; Oliver M. Weber; Tobias Mummert; Gerhard Adam; Harald Ittrich; et al. (Bildverarbeitung für die Medizin, 2016)

Phantom-based ground-truth generation for cerebral vessel segmentation and pulsatile deformation analysis. - Daniel Schetelig; Dennis Säring; Till Illies; Jan Sedlacik; Fabian Kording; René Werner (Image-Guided Procedures, 2016)

Beyond cost function masking: RPCA-based non-linear registration in the context of VLSM. - René Werner; Matthias Wilms; Bastian Cheng; Nils Daniel Forkert (PRNI, 2016)

Systematic Analysis of Jurkat T-Cell Deformation in Fluorescence Microscopy Data. - Sven-Thomas Antoni; Omar M. F. Ismail; Daniel Schetelig; Björn-Philipp Diercks; René Werner; Insa M. A. Wolf; Andreas H. Guse; Alexander Schlaefer (Bildverarbeitung für die Medizin, 2017)

Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels. - Daniel Schetelig; Jan Sedlacik; Felix Schmidt; Jens Fiehler; René Werner (Bildverarbeitung für die Medizin, 2017)

Low Rank and Sparse Matrix Decomposition as Stroke Segmentation Prior: Useful or Not? A Random Forest-Based Evaluation Study. - René Werner; Daniel Schetelig; Thilo Sothmann; Eike Mücke; Matthias Wilms; Bastian Cheng; Nils Daniel Forkert (Bildverarbeitung für die Medizin, 2017)

Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT. - Nik Mogadas; Thilo Sothmann; René Werner (Bildverarbeitung für die Medizin, 2018)

Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation. - Lasse Böhme; Frederic Madesta; Thilo Sentker; René Werner (BrainLes@MICCAI (1), 2018)

GDL-FIRE ^ text 4D : Deep Learning-Based Fast 4D CT Image Registration. - Thilo Sentker; Frederic Madesta; René Werner (MICCAI (1), 2018)

Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation. - Thilo Sothmann; Tobias Gauer; René Werner (Image-Guided Procedures, 2018)

Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data. - Eike Mücke; Heinz Handels; René Werner (Image Processing, 2018)

Skin Lesion Diagnosis using Ensembles, Unscaled Multi-Crop Evaluation and Loss Weighting. - Nils Gessert; Thilo Sentker; Frederic Madesta; Rüdiger Schmitz; Helge Kniep; Ivo M. Baltruschat; René Werner; Alexander Schlaefer (CoRR, 2018)

Machbarkeitsstudie zur CNN-basierten Identifikation und TICI-Klassifizierung zerebraler ischämischer Infarkte in DSA-Daten. - Maximilian Nielsen; Moritz Waldmann; Andreas Frölich; Jens Fiehler; René Werner (Bildverarbeitung für die Medizin, 2019)

Toward employing the full potential of magnetic particle imaging: exploring visualization techniques and clinical use cases for real-time 3D vascular imaging. - René Werner; Dominik Weller; Johannes M. Salamon; Martin Möddel; Tobias Knopp 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Patient-specific 4D Monte Carlo dose accumulation using correspondence-model-based motion prediction. - Thilo Sentker; Frederic Madesta; René Werner (Image-Guided Procedures, 2019)

Self-consistent deep learning-based boosting of 4D cone-beam computed tomography reconstruction. - Frederic Madesta; Tobias Gauer; Thilo Sentker; René Werner (Image Processing, 2019)

Multi-scale fully convolutional neural networks for histopathology image segmentation: from nuclear aberrations to the global tissue architecture. - Rüdiger Schmitz; Frederic Madesta; Maximilian Nielsen; René Werner; Thomas Rösch (CoRR, 2019)

Skin Lesion Classification Using Ensembles of Multi-Resolution EfficientNets with Meta Data. - Nils Gessert; Maximilian Nielsen; Mohsin Shaikh; René Werner; Alexander Schlaefer (CoRR, 2019)

Reservoir Computing for Jurkat T-cell Segmentation in High Resolution Live Cell Ca2+ Fluorescence Microscopy. - Fatemeh Hadaeghi; Björn-Philipp Diercks; Insa M. A. Wolf; René Werner (ISBI, 2020)

3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning. - Ivo M. Baltruschat; Patryk Szwargulski; Florian Griese; Mirco Grosser; René Werner; Tobias Knopp 001 (MICCAI (2), 2020)

Widening the Focus: Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies. - Frederic Madesta; Rüdiger Schmitz; Thomas Rösch; René Werner (MICCAI (4), 2020)

Time Matters: Handling Spatio-Temporal Perfusion Information for Automated TICI Scoring. - Maximilian Nielsen; Moritz Waldmann; Thilo Sentker; Andreas Frölich; Jens Fiehler; René Werner (MICCAI (6), 2020)

Skin Lesion Classification Using CNNs With Patch-Based Attention and Diagnosis-Guided Loss Weighting. - Nils Gessert; Thilo Sentker; Frederic Madesta; Rüdiger Schmitz; Helge Kniep; Ivo M. Baltruschat; René Werner; Alexander Schlaefer (IEEE Trans. Biomed. Eng., 2020)

Abstract: Reduktion der Kalibrierungszeit für die Magnetpartikelbildgebung mittels Deep Learning. - Ivo M. Baltruschat; Patryk Szwargulski; Florian Griese; Mirco Grosser; René Werner; Tobias Knopp 001 (Bildverarbeitung für die Medizin, 2021)

Abstract: Widening the Focus - Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies. - Frederic Madesta; Rüdiger Schmitz; Thomas Rösch; René Werner (Bildverarbeitung für die Medizin, 2021)

Abstract: Time Matters - Handling Spatio-temporal Perfusion Information for Automated Treatment in Cerebral Ischemia Scoring. - Maximilian Nielsen; Moritz Waldmann; Thilo Sentker; Andreas Frölich; Jens Fiehler; René Werner (Bildverarbeitung für die Medizin, 2021)

Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy. - Dong Li; Guangyu Wang; René Werner; Hong Xie; Ji-Song Guan; Claus C. Hilgetag (Frontiers Neuroinformatics, 2021)

Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture. - Rüdiger Schmitz; Frederic Madesta; Maximilian Nielsen; Jenny Krause; Stefan Steurer; René Werner; Thomas Rösch (Medical Image Anal., 2021)

Reinforcement learning-basierte Patchpriorisierung zur beschleunigten Segmentierung von hochauflösenden Endoskopievideodaten. - Samuel Schüttler; Frederic Madesta; Thomas Rösch; René Werner; Rüdiger Schmitz (Bildverarbeitung für die Medizin, 2022)

Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images. - Frederic Madesta; Thilo Sentker; Tobias Gauer; René Werner (CoRR, 2022)

Label Efficient Classification in Liquid Biopsy Data by Self-supervision. - Hümeyra Husseini; Maximilian Nielsen; Klaus Pantel; Harriet Wikman; Sabine Riethdorf; René Werner (Bildverarbeitung für die Medizin, 2023)

Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators. - Moritz Wallrodt; Maximilian Schulz-Alsen; Hanno Ehlken; Thomas Rösch; Rüdiger Schmitz; René Werner (Bildverarbeitung für die Medizin, 2023)

Self-supervision for medical image classification: state-of-the-art performance with 100 labeled training samples per class. - Maximilian Nielsen; Laura Wenderoth; Thilo Sentker; René Werner (CoRR, 2023)

Surgical tool classification and localization: results and methods from the MICCAI 2022 SurgToolLoc challenge. - Aneeq Zia; Kiran Bhattacharyya; Xi Liu; Max Berniker; Ziheng Wang 003; Rogerio Nespolo; Satoshi Kondo; Satoshi Kasai; Kousuke Hirasawa; Bo Liu; David Austin; Yiheng Wang; et al. (CoRR, 2023)

Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images DECO-DIP. - Lina Meyer; Lena-Marie Woelk; Christine E. Gee; Christian Lohr; Sukanya A. Kannabiran; Björn-Philipp Diercks; René Werner (Bildverarbeitung für die Medizin, 2024)

Oriented histogram-based vector field embedding for characterizing 4D CT data sets in radiotherapy. - Frederic Madesta; Lukas Wimmert; Tobias Gauer; René Werner; Thilo Sentker (CoRR, 2024)

Comparison of Framewise Video Classification in Laryngoscopies. - Ole Felber; Louis Bellmann; Philipp Breitfeld; Martin Petzoldt; Felix Rindt; René Werner; Maximilian Nielsen (Bildverarbeitung für die Medizin, 2025)

Dose Reduction in Step-and-Shoot 4D CT Imaging via Breathing Signal-Guided Deep Learning-Driven Selective Data Acquisition: A Feasibility Study. - Lukas Wimmert; Tobias Gauer; J. Dickmann; C. Hofmann; Thilo Sentker; René Werner (ISBI, 2025)

Transferable automatic hematological cell classification: Overcoming data limitations with self-supervised learning. - Laura Wenderoth; Anne-Marie Asemissen; Franziska Modemann; Maximilian Nielsen; René Werner (Comput. Methods Programs Biomed., 2025)

Cluster-based human-in-the-loop strategy for improving machine learning-based circulating tumor cell detection in liquid biopsy. - Hümeyra Husseini-Wüsthoff; Sabine Riethdorf; Andreas Schneeweiss; Andreas Trumpp; Klaus Pantel; Harriet Wikman; Maximilian Nielsen; René Werner (Patterns, 2025)

Anatomy-Informed Deep Learning and Radiomics for Automated Neurofibroma Segmentation in Whole-Body MRI. - Georgii Kolokolnikov; Marie-Lena Schmalhofer; Lennart Well; Said Farschtschi; Victor-Felix Mautner; Inka Ristow; René Werner (CoRR, 2025)